Pairwise Alignments

Query, 627 a.a., Bacteriophytochrome cph2 from Alteromonas macleodii MIT1002

Subject, 653 a.a., diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) from Variovorax sp. SCN45

 Score =  295 bits (754), Expect = 6e-84
 Identities = 171/454 (37%), Positives = 260/454 (57%), Gaps = 7/454 (1%)

Query: 175 RRLMQSLQQEVSKVEQNRAHIQHLAHHDPLTNLPNRILGE-RLFNEKLRESEEKGLQ--- 230
           RRL  SL++  +++ Q    +Q  A  D LT LPNR+L E RL +   R +    LQ   
Sbjct: 196 RRLSSSLEEANAELTQANHELQKRAFTDALTGLPNRVLFEDRLRHALARMNRANQLQVEE 255

Query: 231 -LALLFIDLDNFKPVNDALGHAAGDRFLQKISQTITDHLSTKQSLIRFGGDEFIVLAPEI 289
            +A+LF+DLD FKP+ND+ GH+AGDR L   ++ +  +     ++ R GGDEF++L   +
Sbjct: 256 CIAVLFVDLDGFKPINDSFGHSAGDRILCVAAERLARNTRESDTVARIGGDEFLLLLEGV 315

Query: 290 SDKSEIDDLCKNLITWCSNEFEVLQTKVVVSGSIGVAQAPYDGIKFKQLCRKADIAMYEA 349
            D++E  +    ++      F V    + ++ SIG+   P  G   K L   AD AMYEA
Sbjct: 316 HDRAECAEAANRVLRALGEPFNVQGKLLQIACSIGIVLHPEQGEPDK-LVANADAAMYEA 374

Query: 350 KRNGRNRYEYYDVRFDEENDEKFTLIQRLRPAVQANEFEVYYQPLIDLASNEVQAVEALL 409
           KR G   Y  ++     +  ++  L   LR AV+  +FE+YYQP I+   + +  VEAL+
Sbjct: 375 KRAGGGNYVMFESHMGADAAKQLQLQSDLRRAVELKQFELYYQPKINGVGDSISGVEALV 434

Query: 410 RWPQKDGSMIFPDKFIPLAESSGLIIPLGAWVLNQACEFCAKQHENGHTNLTVAVNLSFA 469
           RW      +I P +FI LAE  GLI+ LG W+L++AC   A+    G T + VAVNLS  
Sbjct: 435 RWNHPQHGLIGPTEFIGLAERFGLIVHLGDWILDEACRQIAQWQAQG-TQMCVAVNLSVM 493

Query: 470 QFKDGTLPAVVEQALQNSQLAPQFLELELTETILADENGTTGEQLEAIKSLGVHFAIDDF 529
           Q ++    A VE+AL    +    L  E+TE++  ++   T   LE +  +GV  +IDDF
Sbjct: 494 QLREVDFVARVERALLRHNVPASLLLCEITESVAMEDIKATQRTLEGLARVGVFLSIDDF 553

Query: 530 GTGYSNLNYLQTFSARKLKIDRIFINTLGIGENDAPLVAAIISIADSLGMKAVAEGIESK 589
           GTGYS+L++L+   AR++KIDR F+  L   E+   ++ A+I +A +LG+  VAEG+E++
Sbjct: 554 GTGYSSLSHLRKLPARQVKIDRSFVQDLQTKEDARAVIDAVIRLAHALGLSVVAEGVENE 613

Query: 590 PALEKLIKMGCDLGQGYYWSKPLPAPEIERLLSN 623
              + L+ MGCD  QG+ +S+PLPA ++    SN
Sbjct: 614 AQRDILLAMGCDELQGFLFSRPLPAGDLLDWFSN 647