Pairwise Alignments

Query, 311 a.a., Site-specific recombinase XerD from Alteromonas macleodii MIT1002

Subject, 333 a.a., putative integrase/recombinase from Sphingobium sp. HT1-2

 Score = 83.6 bits (205), Expect = 6e-21
 Identities = 63/250 (25%), Positives = 115/250 (46%), Gaps = 23/250 (9%)

Query: 66  TLKTRLAALSQWHQSQGFVDPTK---VIQVKKVLKGIRALHPAPVKKATPLAMSMLEQLD 122
           T+  R+AA++  H+  GF  PT       +  +L G+R  +    ++  P    +L+ + 
Sbjct: 81  TIGRRVAAINHHHKEAGFPSPTARDAAGVIATMLAGVRRKYARRKEQKAPAEADVLKAML 140

Query: 123 SHLNAECRSDSRGVSLRAARDRALIWVGFWRGFRSDELTRLLLQGIEESPNHGLSLYLSQ 182
           + +         G+ LRA RDRA++ VG    FR  EL  + L  +  + + GL + + Q
Sbjct: 141 ATIE--------GMGLRALRDRAILAVGMAGAFRRSELAAMQLPDLAFAQS-GLRITIPQ 191

Query: 183 SKGDRQYAGKRHRLPALNTLCPCAALDAWREMLG----------DHEGPVFRKIDRWGVI 232
           SK D++  G+   +P    + P   L  W    G            +G VFR++ R   +
Sbjct: 192 SKRDQEQVGQVIAIPEGRIIRPVNLLKHWLHAAGLSGLDPATGKPRQGAVFRRLTRSDAL 251

Query: 233 AEHALNPRSISRILRQRFEKASINNAQTFSSHSLRRGFAYWAAEQRWSLSDLMTHVGWKD 292
            ++ +  ++++R+++     A + +   +S HSLR GF   AA +R +L  +  H   K 
Sbjct: 252 TDNPITDKTVARLVKTAAAAAGL-DPSLYSGHSLRAGFLTEAASKRANLFKMKDHSRHKS 310

Query: 293 TRTAMAYLET 302
             T   Y+ +
Sbjct: 311 LDTVADYVRS 320