Pairwise Alignments

Query, 313 a.a., site-specific tyrosine recombinase XerD from Alteromonas macleodii MIT1002

Subject, 308 a.a., recombinase from Pseudomonas simiae WCS417

 Score =  314 bits (804), Expect = 2e-90
 Identities = 150/287 (52%), Positives = 203/287 (70%), Gaps = 2/287 (0%)

Query: 13  YVNAATRENTVRSYRTAIEHYERHWGGLLPATPTAIAQYLSHYADRLTSSTLAHRLAVLA 72
           Y+NAATR+NT RSYR AIEH+E  WGG LPAT  ++A+YL  +A  L  +TL  RL+ LA
Sbjct: 7   YLNAATRDNTRRSYRAAIEHFEVSWGGFLPATSASVARYLVAHAGVLAVNTLKLRLSALA 66

Query: 73  KWHHEYGFPDPTKAPLVKKVMKGIRATHAYQTKQARPLQLEELKIIIQWLEESIK-ESKD 131
           +WH   GFPDPTKAP+V+KV+KGIRA H  Q KQA PLQL+ L+ ++  LE   K  + D
Sbjct: 67  QWHTSQGFPDPTKAPVVRKVLKGIRAVHPAQEKQAEPLQLKHLEQVVASLESEAKAAAHD 126

Query: 132 YRKGLRLIRNKAILLLGFWRAFRADELTNIHVEYVTMIPNKGMSLYFPTTKGDRDNKGVT 191
             + LR  R+ A++LLGFWR FR+DEL  + +E+V   P  G+S+Y P +K DRDN G T
Sbjct: 127 LPRLLRAKRDTALILLGFWRGFRSDELCRLEIEHVHATPGAGISVYLPRSKSDRDNLGKT 186

Query: 192 YKVPALQKLCPVTAYQDWVTAAELSKGPLFVGIDRWGHFNHKSMTSNTIINIVRECASGA 251
           Y  PAL +LCPV AY +W++A+ L +GP+F GIDRWG+   + +  N++I ++R+    A
Sbjct: 187 YHTPALLRLCPVQAYNEWLSASALVRGPVFRGIDRWGNLGEEGLHPNSVIPLLRQALERA 246

Query: 252 GLLHPDAFSSHSLRRGFASWADSNGWSLKELMEYVGWKDPKTALRYI 298
           G +  + ++SHSLRRGFA+WA  +GW LK LM YVGW D K+A+RY+
Sbjct: 247 G-IPAEQYTSHSLRRGFATWAHRSGWDLKSLMSYVGWSDMKSAMRYV 292