Pairwise Alignments

Query, 599 a.a., Acyl-CoA dehydrogenase from Alteromonas macleodii MIT1002

Subject, 593 a.a., 3-methylmercaptopropionyl-CoA dehydrogenase (DmdC) from Variovorax sp. SCN45

 Score =  419 bits (1077), Expect = e-121
 Identities = 245/598 (40%), Positives = 341/598 (57%), Gaps = 19/598 (3%)

Query: 4   YKAPQRDAMFVTHELLNYQNHYQKLGFDEASEDLVSAIFAEAAKFSENVLAPINASGDEE 63
           Y AP R+ +F   E+        +   +E + DLV AI  EAA ++  VL P+N  GD +
Sbjct: 4   YIAPLREMLFAMKEVGGLDAICAQPDHEETTPDLVEAILQEAANYAAGVLDPLNRPGDVQ 63

Query: 64  GCKWVDGEVTTPKGFKEAYQTYVEGGWPGMSHPEEFGGQALPYSLSSIIAEWFSGANHSW 123
           G +W DG VT   GF+EA+ ++ E GW GM    E+GGQ LP  +S+ + E +  +N ++
Sbjct: 64  GARWHDGRVTPADGFREAWASFCENGWNGMPAATEWGGQGLPTLVSTAVLEMWKSSNLAF 123

Query: 124 AMYPGLSQGCMATIKAHGSELLQKMFLEKLVSGEWTGTMCLTEAHCGSDLGMLKCRAEPQ 183
           ++   L+ G +  I  HGS+ LQ+ FL  +V G WTGTM LTE   GSDL  L+ RA  +
Sbjct: 124 SLCQMLTLGAVEAIAHHGSDALQRRFLAPMVEGRWTGTMNLTEPQAGSDLAALRSRAVHE 183

Query: 184 EDGTYSLTGTKIFISAGEHDLSENIVHIVLARLPDAPEGTKGISLFVVPKFNVSEDGEKQ 243
            D  Y ++G KIFI+ GEHD++ENIVH+VLARLPDAP G KGISLF+ PK+ V++DG   
Sbjct: 184 GD-HYHVSGNKIFITWGEHDMAENIVHLVLARLPDAPPGVKGISLFLCPKYLVNDDGTLG 242

Query: 244 DRNAVGCGSIEHKMGIKASATCVINF---DGAKGYLIGPPNRGLNCMFTFMNTARIGTGL 300
           +RN + C SIEHKMGI  S T  ++F    GA GYL+G P++GL CMFT MN AR+  GL
Sbjct: 243 ERNDLACTSIEHKMGIHGSPTASMSFGDSGGAIGYLVGEPHQGLACMFTMMNHARLNVGL 302

Query: 301 EGLASSEAAFQGALRYAKDRIQFRSLTGRKNPDGPADPIIVHPDVRRMLLTQKAFAEGNR 360
           EG+  SE A+Q A  YA +R+Q + L         +  I  HPDVRRML+  KA  E  R
Sbjct: 303 EGVGISERAYQRARAYALERVQGKPLI------SGSTAIAGHPDVRRMLMDMKARTEAMR 356

Query: 361 ALAAYCMQLVDVTLYGSDEAEKQLADAKLAFLTPIVKAFLTETAQEATSYGMQVYGGHGF 420
           ALA +C   +D     +D  E+  A A +  L P+VK + T++AQ  TS G+QV+GG G+
Sbjct: 357 ALAYFCAGQMDRAAGHADAQERAQAQALVGLLIPVVKGWCTDSAQGITSDGVQVHGGMGY 416

Query: 421 IKEWGMEQLARDTRICTMYEGTTGIQAVDLLGRKVMGSNGELLNVFVQEVRDYCNSLRDN 480
           ++E G  Q  RD RI T+YEGTTGIQA DL+GRK+    G  L   +  +      L ++
Sbjct: 417 VEETGASQHMRDARITTIYEGTTGIQANDLIGRKLAREGGRTLKALLGRIDGDARRLVES 476

Query: 481 -----AQFSAWTNALNSHLDEWQQITMDIGKAAASNPDEIGAASVDYLMYSGYVTVAYFW 535
                AQ      A    LDE     +D   A    P +  A +V +L  +G V   +  
Sbjct: 477 PDAVLAQIGRALAAAAQALDE----AVDWLLAHDGQPAQCAAGAVPFLRLAGTVIGGWLS 532

Query: 536 LKMAVKAQEQLDAGSTETEFYKSKILTTGFYFDRLLTRTRSLVSAMQSGADNLMSMPE 593
            +MA  A  QL AG+ +  F  +K  T   Y   +L +   L   +  GA + +++ +
Sbjct: 533 ARMAEAATAQLAAGAGDAGFLGTKRATASHYAAHVLVQAPMLRDIVTGGAASTLALAD 590