Pairwise Alignments

Query, 884 a.a., DNA topoisomerase 1 from Alteromonas macleodii MIT1002

Subject, 907 a.a., DNA topoisomerase 1 from Xanthobacter sp. DMC5

 Score =  422 bits (1085), Expect = e-122
 Identities = 282/779 (36%), Positives = 407/779 (52%), Gaps = 114/779 (14%)

Query: 5   LVIVESPAKAKTINKYLGKNFIVKSSVGHVRDLPTKALGKVEPKKPAKELKTLSEEERQE 64
           +VIVESPAKAKTINKYLG  + V +S GHVRDLP+K                        
Sbjct: 15  VVIVESPAKAKTINKYLGPGYEVIASYGHVRDLPSKD----------------------- 51

Query: 65  YLRRHEYLKLVDRMGVDPEKDWKAHYQVLQGKEKVVNELKKLAKDADTIYLATDLDREGE 124
                          VDP+ D++  + V    +K +NE+    K AD + LATD DREGE
Sbjct: 52  -------------GSVDPDADFRMLWDVDPKAQKRLNEIAAAVKGADGLILATDPDREGE 98

Query: 125 AIAWHLQELLGKK----DKTYQRVVFNEITKNAIQDAFSDPGELNISRVNAQQARRFLDR 180
           AI+WH+ E+L +K     +  +RVVFN ITK A+ +A   P  ++ + V+A  ARR LD 
Sbjct: 99  AISWHVLEVLRQKKALKSQKVERVVFNAITKQAVLEAMKSPRAIDSALVDAYLARRALDY 158

Query: 181 VVGFMVSPLLWKKIARGLSAGRVQSVAVRLVVEREREIKAFVPEEFWDVHADLTSQQKAA 240
           +VGF +SP+LW+K+    SAGRVQSVA+RLV +REREI+ FV +E+W + A L + +   
Sbjct: 159 LVGFTLSPVLWRKLPGARSAGRVQSVALRLVCDREREIETFVRKEYWSILAKLATPRNEE 218

Query: 241 LRMLVAKHQGNAFKPKNKAETDKALA---DLEGANYKVESRESKPTQSRPSAPFITSTLQ 297
               ++   G      +    ++A A    L+ A ++V S E+KP +  P  PF TSTLQ
Sbjct: 219 FEARLSGADGKKITRLSVGTAEEARAFREALDSAAFRVRSVEAKPMKRHPQPPFTTSTLQ 278

Query: 298 QAASTRLGFGVKKTMMMAQRLYEA--------GYITYMRTDSTNLSQEALDSARAYISDN 349
           Q AS +LG    +TM +AQRLYE         G ITYMRTD  +++ EA+ + R  I   
Sbjct: 279 QEASRKLGLAPARTMQIAQRLYEGVDVGGETVGLITYMRTDGVDMAPEAVAATRDAIGKQ 338

Query: 350 FGDKYLPDSPNRYGSK-EGAQEAHEAIRPSNVSISAASLGD-MERDAQRLYELIWRQFVA 407
           FG KYLP  P +Y +K + AQEAHEAIRP++ S     +   ++ +  +LYELIW + VA
Sbjct: 339 FGQKYLPGVPRKYTTKAKNAQEAHEAIRPTDPSRHPRDVARYLDGEQAKLYELIWIRTVA 398

Query: 408 CQMTPAKYDATTI----KVAAGDYELTAKGRVLKFDGWTRVQPQLRKK---GEEELMLPD 460
            QM  A+ + TT     K  A   +LTA G V+KFDG+  +  + +      EE   LP 
Sbjct: 399 SQMESAELERTTADIEAKAGARTLDLTATGTVVKFDGFLTLYREGKDDEDDDEEGRRLPA 458

Query: 461 VQKGDVLDLKALDPKQHFTKPVARFNEASLVKELEKRGIGRPSTYASIISTIQDRGYVRL 520
           +   + L  + +   QHFT+P  R++EASLVK +E+ GIGRPSTYA++++ ++DR YV+L
Sbjct: 459 MSANEALAKRDISTTQHFTEPPPRYSEASLVKRMEELGIGRPSTYAAVLAVLRDREYVKL 518

Query: 521 ENKRFYAEKMGEIVNDRLMENFDDLMSYDFTANMEQHLDDIAEGKKNWKDVLNDFYSGFY 580
           + K+   E  G +V   L   F   + YDFTA++E+ LD+++  + +WK+VL  F+  F+
Sbjct: 519 DKKKLVPEDKGRLVTAFLESFFKRYVEYDFTADLEEKLDEVSAAELDWKEVLRAFWQDFH 578

Query: 581 GKLLNAEKDPEEGGMRLNQAVPAGVECDKCGREMNVRTASTGVFLGCSGYNLPPKERCTN 640
             +  A KD     +R++Q + A  E                     + +  PP+E  T+
Sbjct: 579 AAI-EATKD-----LRVSQVLDALDEM-------------------LTAHIFPPREDGTD 613

Query: 641 TMNLTPGDEVVKVDDEEELETEALRSKKRCPKCGTAMDSYLVDETRKLHVCGNTPTCDGT 700
                                      + CP CGT   S  + +      C N P C  T
Sbjct: 614 P--------------------------RLCPTCGTGRLSLKMGKFGAFIGCSNYPECRHT 647

Query: 701 LVETGTFKIKGYDGPIIECD-KCGSDMELKNGRFGKY--FGCTKEECKNTRKLLRNGEA 756
              TG    +G    ++  D   G ++ +++GRFG Y   G  KE  K  R  L  G A
Sbjct: 648 RPLTGDNPQEGDGTRVLGLDPDSGEEVTIRSGRFGTYLQLGEGKEGEKPKRSSLPKGLA 706



 Score = 30.4 bits (67), Expect = 5e-04
 Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 1/44 (2%)

Query: 758 PPKEDPVDLPELPCEKSDAHFMLRDGASGIFLAAHNFPKSRETR 801
           PP+ED  D P L          L+ G  G F+   N+P+ R TR
Sbjct: 606 PPREDGTD-PRLCPTCGTGRLSLKMGKFGAFIGCSNYPECRHTR 648