Pairwise Alignments

Query, 884 a.a., DNA topoisomerase 1 from Alteromonas macleodii MIT1002

Subject, 649 a.a., DNA topoisomerase III from Pseudomonas simiae WCS417

 Score =  126 bits (316), Expect = 5e-33
 Identities = 144/537 (26%), Positives = 231/537 (43%), Gaps = 65/537 (12%)

Query: 82  PEKDWKAHYQVLQGKEKVVNE---LKKLAKDADTIYLATDLDREGEAIAWHLQELLGKKD 138
           PEK WK     ++ K K  ++   +K+L  +A  + +ATD DREGE IA  L E    + 
Sbjct: 68  PEK-WK-----MRVKPKTASQFKAVKRLLGEAQELVIATDADREGEMIARELVEHCRYRG 121

Query: 139 KTYQRVVFNEITKNAIQDAFS--DPGELNISRVNAQQARRFLDRVVGFMVSPLLWKKIAR 196
              QR+  + +   +I+ A +   PG    S  ++   R   D ++G  +S L      +
Sbjct: 122 PI-QRLWLSALDDASIRKALAALKPGAETFSLYHSALGRSRADWLIGMNMSRLFTLLGRQ 180

Query: 197 G-----LSAGRVQSVAVRLVVEREREIKAFVPEEFWDVHADL-------TSQQKAALRML 244
                 L  GRVQ+  +RLVV+R+R I  FVP  +W +  DL       T+Q +AA    
Sbjct: 181 SGYQGVLPVGRVQTPTLRLVVDRDRSIADFVPVAYWAIDVDLQHERITFTAQWRAAED-- 238

Query: 245 VAKHQGNAFKPKNKAETDKALADLEGANYKVESRESKPTQSRPSAPFITSTLQQAASTRL 304
               QG    P+   +   A+ +   A   V+ R  +  +  P  PF   TLQ+  S +L
Sbjct: 239 ACDDQGRCLDPQLARDAADAMRNAATARL-VKLRTERMREVAP-LPFDLGTLQEICSKKL 296

Query: 305 GFGVKKTMMMAQRLYEA-GYITYMRTDSTNLSQEALDSARAYI-----SDNFGDKYLPDS 358
           G G ++T+ +AQ LYE    ITY R+D   L       A   +     +D   ++ +P  
Sbjct: 297 GLGAQETLDIAQSLYETHKVITYPRSDCGYLPLSQHSEAPKILAALARADAAVNELMPHI 356

Query: 359 PNRYGSK---EGAQEAHEAIRPSNVSISAASLGDMERDAQRLYELIWRQFVACQMTPAKY 415
             +  S+   +    AH  I P+    +   +G +    + +Y LI  +++A  +   +Y
Sbjct: 357 ETQRRSRAWNDAKVSAHHGIIPTG---AGKDVGQLTGKHRAVYTLIRARYLAQFLPNHEY 413

Query: 416 DATTIKVAAGDYELTAKGRVLKFDGWTRVQPQ--LRKKGEE---ELMLPDVQKGDVLDLK 470
           D T          L A G+V+   GW R  P+     KG E      LP + +G    + 
Sbjct: 414 DRTQADFDCAGQALRAVGKVVIEPGWKRALPEALAPAKGREAPAPQALPALVQGQDYAVA 473

Query: 471 ALDPKQHFTKPVARFNEASLVKEL-----------------EKRGIGRPSTYASIISTIQ 513
            ++ K  +T+P   F E  L+K +                 +  GIG  +T A II  + 
Sbjct: 474 KVNLKDLWTQPPKPFTEGDLIKAMKNVAKLVEDPLLKQKLKDTTGIGTEATRAGIIQGLL 533

Query: 514 DRGYVRLENKRFYAEKMGEIVNDRLMENFDDLMSYDFTANMEQHLDDIAEGKKNWKD 570
           DRGY+    K   A      + D +     D  +   TA  EQ LD +  G+ + ++
Sbjct: 534 DRGYLVKNGKALSATPAAFSLIDAVPRAIADPGT---TAIWEQALDMVQSGEMSLEE 587