Pairwise Alignments

Query, 884 a.a., DNA topoisomerase 1 from Alteromonas macleodii MIT1002

Subject, 869 a.a., DNA topoisomerase I from Pseudomonas putida KT2440

 Score = 1167 bits (3019), Expect = 0.0
 Identities = 576/873 (65%), Positives = 691/873 (79%), Gaps = 12/873 (1%)

Query: 1   MAKSLVIVESPAKAKTINKYLGKNFIVKSSVGHVRDLPTKALGKVEPKKPAKELKTLSEE 60
           M KSLVIVESPAKAKTINKYLG  ++VKSS+GH+RDLPT        +  AK  K   E 
Sbjct: 1   MGKSLVIVESPAKAKTINKYLGNQYVVKSSIGHIRDLPTSGSASASKEPAAKRGKAAGEA 60

Query: 61  ER---QEYLRRHEYLKLVDRMGVDPEKDWKAHYQVLQGKEKVVNELKKLAKDADTIYLAT 117
                +E  RR    +LV RMGVDP+  WKA Y++L GKEKV+ EL++LAKDADTIYLAT
Sbjct: 61  PALSPKEKARR----QLVARMGVDPDHGWKAKYEILPGKEKVIEELRRLAKDADTIYLAT 116

Query: 118 DLDREGEAIAWHLQELLGKKDKTYQRVVFNEITKNAIQDAFSDPGELNISRVNAQQARRF 177
           DLDREGEAIAWHL+E +G  D  Y+RVVFNEITK AIQ+AFS PGEL+I RVNAQQARRF
Sbjct: 117 DLDREGEAIAWHLREAIGGDDTRYKRVVFNEITKKAIQEAFSQPGELDIDRVNAQQARRF 176

Query: 178 LDRVVGFMVSPLLWKKIARGLSAGRVQSVAVRLVVEREREIKAFVPEEFWDVHADLTSQQ 237
           LDRVVG+MVSPLLW KIARGLSAGRVQSVAV+LVVEREREI+AF+PEE+W++HADL + +
Sbjct: 177 LDRVVGYMVSPLLWAKIARGLSAGRVQSVAVKLVVEREREIRAFIPEEYWEIHADLGTAK 236

Query: 238 KAALRMLVAKHQGNAFKPKNKAETDKALADLEGANYKVESRESKPTQSRPSAPFITSTLQ 297
            A +R  VA+ +G AFKP N+A+   AL  L+ ++Y V  RE +PT S+PSAPFITSTLQ
Sbjct: 237 NAKVRFEVAREKGEAFKPLNEAQAMAALEKLKASSYSVVKREDRPTSSKPSAPFITSTLQ 296

Query: 298 QAASTRLGFGVKKTMMMAQRLYEAGYITYMRTDSTNLSQEALDSARAYISDNFGDKYLPD 357
           QAAS RLGFGVKKTMMMAQRLYEAGYITYMRTDSTNLS +ALD AR+YI   FG +YLP+
Sbjct: 297 QAASNRLGFGVKKTMMMAQRLYEAGYITYMRTDSTNLSADALDMARSYIEREFGKQYLPE 356

Query: 358 SPNRYGSKEGAQEAHEAIRPSNVSISAASLGDMERDAQRLYELIWRQFVACQMTPAKYDA 417
           +P  YGSKEGAQEAHEAIRPS+V+     L  MERDA+RLYELIWRQF+ACQM PA+Y +
Sbjct: 357 APLVYGSKEGAQEAHEAIRPSDVNTHPTKLSGMERDAERLYELIWRQFLACQMPPAQYLS 416

Query: 418 TTIKVAAGDYELTAKGRVLKFDGWTRVQPQLRKKGEEELMLPDVQKGDVLDLKALDPKQH 477
           T++ VAAGD+EL AKGR+LKFDG+TRV PQ  K GE++ +LP++ +G+ L L  +DP QH
Sbjct: 417 TSVTVAAGDFELRAKGRILKFDGYTRVLPQQSKPGEDD-VLPEMVQGEALKLIQIDPSQH 475

Query: 478 FTKPVARFNEASLVKELEKRGIGRPSTYASIISTIQDRGYVRLENKRFYAEKMGEIVNDR 537
           FTKP ARF EASLVKE+EKRGIGRPSTYA+IISTIQDRGYV L N+RFY+EKMG+IV +R
Sbjct: 476 FTKPPARFTEASLVKEMEKRGIGRPSTYAAIISTIQDRGYVTLHNRRFYSEKMGDIVTER 535

Query: 538 LMENFDDLMSYDFTANMEQHLDDIAEGKKNWKDVLNDFYSGFYGKLLNAEKDPEEGGMRL 597
           L E+F +LM Y FTA+ME++LDD+A+G+++WK+VL++FY  F  KL  AE    E GMR 
Sbjct: 536 LSESFSNLMDYGFTADMEENLDDVAQGERDWKNVLDEFYGDFSKKLQTAES--SEDGMRA 593

Query: 598 NQAVPAGVECDKCGREMNVRTASTGVFLGCSGYNLPPKERCTNTMNLTPGDEVVKVDDEE 657
           NQ     + C +CGR M +RTASTGVFLGCSGY+LPPKERC  T+NL PGDE+   DDE 
Sbjct: 594 NQPTMTNIPCKECGRPMMIRTASTGVFLGCSGYSLPPKERCKATVNLVPGDEIA-ADDEG 652

Query: 658 ELETEALRSKKRCPKCGTAMDSYLVDETRKLHVCGNTPTCDGTLVETGTFKIKGYDGPII 717
           E E+  L  K RCP C TAMD+YL+DE  KLH+CGN P C G  +E G ++IKGY+GP +
Sbjct: 653 ESESRVLLGKHRCPICATAMDAYLLDEKHKLHICGNNPDCVGYEIEEGNYRIKGYEGPSL 712

Query: 718 ECDKCGSDMELKNGRFGKYFGCTKEECKNTRKLLRNGEAAPPKEDPVDLPELPCEKSDAH 777
           ECDKCGS+M+LK GRFGK+FGCT   CKNTRKLL++GEAAPPK D VD+PEL CEK D  
Sbjct: 713 ECDKCGSEMQLKTGRFGKFFGCTNPACKNTRKLLKSGEAAPPKMDKVDMPELKCEKVDDT 772

Query: 778 FMLRDGASGIFLAAHNFPKSRETRAPKVEELARFRDRISPKFYYLADAPQTDPDGNPAIV 837
           ++LRDGASG+FLAA  FPK+RETRAP V E+   +  I PK+++L DAPQ DPDG PA++
Sbjct: 773 YVLRDGASGLFLAASQFPKNRETRAPLVLEIVPHKHEIDPKYHFLCDAPQKDPDGRPAVI 832

Query: 838 RYSRKTKQQYVMSENDNGKATGWSAWYDNGKWQ 870
           RYSRKTK+QYV SE D GK TGW A+YD   W+
Sbjct: 833 RYSRKTKEQYVQSEVD-GKPTGWKAFYDGNAWK 864