Pairwise Alignments

Query, 671 a.a., Excinuclease ABC subunit B from Alteromonas macleodii MIT1002

Subject, 673 a.a., excinuclease ABC subunit UvrB from Escherichia coli ECRC99

 Score =  978 bits (2528), Expect = 0.0
 Identities = 487/673 (72%), Positives = 577/673 (85%), Gaps = 2/673 (0%)

Query: 1   MSRGFELHSKYKPAGDQPKAIEALVDGLESGLAGQTLLGVTGSGKTFTMANVIKEVQRPT 60
           MS+ F+L+S +KP+GDQP+AI  L +GLE GLA QTLLGVTGSGKTFT+ANVI ++QRPT
Sbjct: 1   MSKPFKLNSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPT 60

Query: 61  LILAHNKTLAAQLYGEMKEFFPNNAVEYFVSYYDYYQPEAYVPSTDTFIEKDASINDHIE 120
           ++LA NKTLAAQLYGEMKEFFP NAVEYFVSYYDYYQPEAYVPS+DTFIEKDAS+N+HIE
Sbjct: 61  MVLAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIE 120

Query: 121 QMRLSATKALMERRDVVIVASVSAIYGLGDPESYMKMLLHLRQGDTMDQRDILRRLAELQ 180
           QMRLSATKA++ERRDVV+VASVSAIYGLGDP+ Y+KM+LHL  G  +DQR ILRRLAELQ
Sbjct: 121 QMRLSATKAMLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQ 180

Query: 181 YKRNDLAFERGTFRVRGDVIDIFPADSEKQAVRVELFDDEIDKISLFDPLTGAVDKSVIR 240
           Y RND AF+RGTFRVRG+VIDIFPA+S+  A+RVELFD+E++++SLFDPLTG +  ++ R
Sbjct: 181 YARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPR 240

Query: 241 ATVFPKTHYVTPREKILNAIEHIKEELGDRKKQLQEANKLIEEQRISQRTQFDIEMMMEL 300
            T++PKTHYVTPRE+I+ A+E IKEEL  R+K L E NKL+EEQR++QRTQFD+EMM EL
Sbjct: 241 FTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNEL 300

Query: 301 GYCSGIENYSRYLSGRAPGEPPPTLLDYFPADGLMFIDESHVTVSQVGAMYRGDRSRKET 360
           GYCSGIENYSR+LSGR PGEPPPTL DY PADGL+ +DESHVT+ Q+G MYRGDR+RKET
Sbjct: 301 GYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKET 360

Query: 361 LVEFGFRLPSALDNRPLKFEEFEQICPQTIYVSATPGDYELKKTDGEIVEQVVRPTGLLD 420
           LVE+GFRLPSALDNRPLKFEEFE + PQTIYVSATPG+YEL+K+ G++V+QVVRPTGLLD
Sbjct: 361 LVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLD 420

Query: 421 PVIEVRPVATQVDDVLSEIQKRVELDERVLITTLTKRMAEDLSEYLNEHGVKVRYLHSDI 480
           P+IEVRPVATQVDD+LSEI++R  ++ERVL+TTLTKRMAEDL+EYL EHG +VRYLHSDI
Sbjct: 421 PIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDI 480

Query: 481 DTVERIEIIRDLRLGKFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRAERSLIQTIG 540
           DTVER+EIIRDLRLG+FDVLVGINLLREGLDMPEVSLVAILDADKEGFLR+ERSLIQTIG
Sbjct: 481 DTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIG 540

Query: 541 RAARHVNGKAILYADSITKSMKKAMDETERRREKQMAHNEANGITPMRLNKPITDIMDLG 600
           RAAR+VNGKAILY D IT SM KA+ ETERRREKQ  +NE +GITP  LNK + DI+ LG
Sbjct: 541 RAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALG 600

Query: 601 D--SAHPASGKVRLRKVEEKKKQQKTASATELMDQITELEKQMFEYARELEFEKAASLRD 658
              +   A G+ + R + E        S   L  +I ELE  M ++A+ LEFE+AA +RD
Sbjct: 601 QNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRD 660

Query: 659 DIEALRKQVVTLS 671
            +  LR+  +  S
Sbjct: 661 QLHQLRELFIAAS 673