Pairwise Alignments

Query, 671 a.a., Excinuclease ABC subunit B from Alteromonas macleodii MIT1002

Subject, 988 a.a., excinuclease ABC subunit B from Agrobacterium fabrum C58

 Score =  772 bits (1993), Expect = 0.0
 Identities = 397/660 (60%), Positives = 496/660 (75%), Gaps = 5/660 (0%)

Query: 7   LHSKYKPAGDQPKAIEALVDGLESGLAGQTLLGVTGSGKTFTMANVIKEVQRPTLILAHN 66
           + S+Y+PAGDQP AI  LV+G+ SG   Q LLGVTGSGKTFTMA VI+  QRP +ILA N
Sbjct: 173 MDSEYQPAGDQPTAIADLVEGINSGERSQVLLGVTGSGKTFTMAKVIEATQRPAVILAPN 232

Query: 67  KTLAAQLYGEMKEFFPNNAVEYFVSYYDYYQPEAYVPSTDTFIEKDASINDHIEQMRLSA 126
           KTLAAQLY E K FFP+NAVEYFVSYYDYYQPEAYVP +DTFIEK++SIN+ I++MR SA
Sbjct: 233 KTLAAQLYSEFKNFFPDNAVEYFVSYYDYYQPEAYVPRSDTFIEKESSINEQIDRMRHSA 292

Query: 127 TKALMERRDVVIVASVSAIYGLGDPESYMKMLLHLRQGDTMDQRDILRRLAELQYKRNDL 186
           T++L+ER D +IVASVS IYG+G  E+Y  M   ++ GD +DQR +L  L   QYKR D+
Sbjct: 293 TRSLLERDDCIIVASVSCIYGIGSVETYTAMTFQMQVGDRLDQRQLLADLVAQQYKRRDM 352

Query: 187 AFERGTFRVRGDVIDIFPADSEKQAVRVELFDDEIDKISLFDPLTGAVDKSVIRATVFPK 246
            F+RG+FRVRGD I+IFPA  E  A R+ +F DEID I+ FDPLTG     +    ++  
Sbjct: 353 DFQRGSFRVRGDTIEIFPAHLEDAAWRISMFGDEIDSITEFDPLTGQKTGDLQSVKIYAN 412

Query: 247 THYVTPREKILNAIEHIKEELGDRKKQLQEANKLIEEQRISQRTQFDIEMMMELGYCSGI 306
           +HYVTPR  +  AI+ IKEEL  R  +L++A +L+E QR+ QRT++DIEM+   G C+GI
Sbjct: 413 SHYVTPRPTLNGAIKSIKEELKVRLAELEKAGRLLEAQRLEQRTRYDIEMLEATGSCAGI 472

Query: 307 ENYSRYLSGRAPGEPPPTLLDYFPADGLMFIDESHVTVSQVGAMYRGDRSRKETLVEFGF 366
           ENYSRYL+GR PGEPPPTL +Y P + L+FIDESHV+VSQ+G MYRGD  RK TL E+GF
Sbjct: 473 ENYSRYLTGRNPGEPPPTLFEYIPDNALLFIDESHVSVSQIGGMYRGDFRRKATLAEYGF 532

Query: 367 RLPSALDNRPLKFEEFEQICPQTIYVSATPGDYELKKTDGEIVEQVVRPTGLLDPVIEVR 426
           RLPS +DNRPL+FEE++ + P T+ VSATPG +E++++ G   EQV+RPTGL+DP +EVR
Sbjct: 533 RLPSCMDNRPLRFEEWDAMRPLTVAVSATPGSWEMEQSGGVFAEQVIRPTGLIDPPVEVR 592

Query: 427 PVATQVDDVLSEIQKRVELDERVLITTLTKRMAEDLSEYLNEHGVKVRYLHSDIDTVERI 486
              +QVDDVL EI++      R L T LTKRMAEDL+EYL+E GV+VRY+HSDIDT+ERI
Sbjct: 593 SARSQVDDVLGEIRETAAKGYRTLCTVLTKRMAEDLTEYLHEQGVRVRYMHSDIDTLERI 652

Query: 487 EIIRDLRLGKFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRAERSLIQTIGRAARHV 546
           EIIRDLRLG FDVLVGINLLREGLD+PE   VAILDADKEGFLR+E SLIQTIGRAAR+V
Sbjct: 653 EIIRDLRLGAFDVLVGINLLREGLDIPECGFVAILDADKEGFLRSETSLIQTIGRAARNV 712

Query: 547 NGKAILYADSITKSMKKAMDETERRREKQMAHNEANGITPMRLNKPITDIMD-LGDSAHP 605
           +GK ILYAD+IT SMK+AM+ET RRREKQMA+N  +GITP  +   I+DI+D + +  H 
Sbjct: 713 DGKVILYADNITGSMKRAMEETSRRREKQMAYNAEHGITPESVKAKISDILDSVYERDHV 772

Query: 606 ASGKVRLRKVEEKK-KQQKTASATELMDQITELEKQMFEYARELEFEKAASLRDDIEALR 664
              +  +  V  K            L   +  LEK M + A +L+FEKAA LRD+I+ L+
Sbjct: 773 ---RADISGVSGKGFADGGHLVGNNLQAHLNALEKSMRDAAADLDFEKAARLRDEIKRLK 829