Pairwise Alignments

Query, 373 a.a., Phage shock protein F from Alteromonas macleodii MIT1002

Subject, 670 a.a., putative 2-component regulator, interaction with sigma 54 (VIMSS) from Escherichia coli BW25113

 Score =  224 bits (570), Expect = 7e-63
 Identities = 118/242 (48%), Positives = 166/242 (68%), Gaps = 1/242 (0%)

Query: 9   NLLGQSNSFLEVLEQISQIAPLDKPVLVIGERGTGKELIAARLHFLSKRWDQNYIKLNCA 68
           +++ QS +  ++L+Q+  +A  D  VL+ GE GTGKE+IA  +H LS R D+  +K+NCA
Sbjct: 346 DIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIARAIHQLSPRRDKPLVKINCA 405

Query: 69  ALSESLLESELFGYEAGAFTGASKRREGRFEVAHNGTLFLDELANTSGLIQEKLLRVVEY 128
           A+  SLLESELFG++ GAFTGA     GRFE+A  GTLFLDE+ +    +Q KLLRV++ 
Sbjct: 406 AIPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLFLDEIGDLPLELQPKLLRVLQE 465

Query: 129 GEFERVGGSKSVKTDVRLIAATNEDLPALADAGEFRADLLDRLAFDVITIPPLRERREDI 188
            E ER+GGS+++  +VR+IAATN DL  + +  +FR+DL  RL    + +PPLR+R EDI
Sbjct: 466 REIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLFYRLNVFPLELPPLRDRPEDI 525

Query: 189 MMLAENFAINMAREMEMELFSGFTEKAKRTLLDYDWPGNIRELKNVVERAVYRTNNPHLP 248
            +LA++F   MAR M   + +  TE A R L+ +DWPGN+REL+NV+ERAV  T    L 
Sbjct: 526 PLLAKHFTQKMARHMNRAIDAIPTE-ALRQLMSWDWPGNVRELENVIERAVLLTRGNSLN 584

Query: 249 VH 250
           +H
Sbjct: 585 LH 586