Pairwise Alignments

Query, 299 a.a., ABC transporter, nucleotide binding/ATPase protein (agrocinopine) from Agrobacterium fabrum C58

Subject, 340 a.a., Oligopeptide transport ATP-binding protein OppD from Xanthobacter sp. DMC5

 Score =  250 bits (639), Expect = 3e-71
 Identities = 144/306 (47%), Positives = 185/306 (60%), Gaps = 15/306 (4%)

Query: 2   PARDITIINGVSFSLDAGQTLGLVGESGCGKSMTCYAIAKALPRGISQTGGT-------- 53
           PA  +T ++ +SF + AG+TL +VGESGCGKS+T  A+ + L    ++  G+        
Sbjct: 19  PAGRLTAVDRLSFDIAAGETLAIVGESGCGKSVTAMALLRLLRSPPAEISGSHVRFEGTE 78

Query: 54  -IELDSGPKADGKP-AIAMIYQDPTSSLNPVHSIGYYLESSLYRHQGLEGNDARLEAMRL 111
            + L      D +   IAMI+QDP S+LNPV ++   +  SL RH GL G      A+ L
Sbjct: 79  LLALSERAMRDVRGNRIAMIFQDPLSALNPVRTVADQIIESLKRHTGLRGPALHRRAVEL 138

Query: 112 LERVGIDRAKSRLRSYPHEFSGGMNQRVMIAHALAAKPKLMIADEPTTALDVTTQAQILH 171
           L+ V I   + R   YPH FSGGM QRVMIA A+AA P+L+IADEPTTALDVT QAQIL 
Sbjct: 139 LDLVRIPEPQRRADDYPHHFSGGMRQRVMIAIAIAANPRLLIADEPTTALDVTVQAQILK 198

Query: 172 LLEELRSETGMALLIVSHDLGVIARLADRAAVMYCGKIVETAPVAELLERAAHPYARALI 231
           L+  L+ E GM+LL++SHDLGV+A  ADR  VMY G+ VE  PVA+L  R  HPY RAL+
Sbjct: 199 LIVSLQKEFGMSLLLISHDLGVVAETADRVLVMYAGRKVEERPVADLFARPLHPYTRALM 258

Query: 232 GCMPT--IDADDLEPPVPIPGSVPLLDNLPAGCYYHPRCPRASEQCSVSFPGPVNVGAFH 289
              PT  +  + L+    IPG VP L +LP GC + PRC  A E C+   P    VG   
Sbjct: 259 RARPTPGLRRELLD---EIPGIVPSLADLPPGCAFAPRCAHADEACARLQPVLEGVGGGG 315

Query: 290 DAACYH 295
             AC H
Sbjct: 316 SVACLH 321