Pairwise Alignments

Query, 1087 a.a., DNA polymerase III, alpha chain from Agrobacterium fabrum C58

Subject, 1099 a.a., Error-prone DNA polymerase from Xanthobacter sp. DMC5

 Score =  994 bits (2570), Expect = 0.0
 Identities = 547/1093 (50%), Positives = 706/1093 (64%), Gaps = 47/1093 (4%)

Query: 3    YAELQVTTHFSFLRGASSAQELFETAKALGIEALGVVDRNSLAGIVRALEA--------- 53
            YAEL   +HFSFLRGAS+   L  TA  LG++ LG+ DRN++AG+VRA  A         
Sbjct: 6    YAELAAASHFSFLRGASAPAHLVRTAVGLGLDGLGIADRNTVAGVVRAYSALEDLRALDE 65

Query: 54   ----------------SRATGLRLVIGCRLDLADGMS-VLVYPTDRAAYSRLTRLITLGK 96
                            +RA   RLV G RL   DG + ++ YP+ RA + RL RL+T G 
Sbjct: 66   DLEADDPEADAKRAVAARARAFRLVTGARLVFCDGTADIIAYPSTRAGWGRLCRLLTTGN 125

Query: 97   SRGGKNNCLLHWDDVVAYTDGMIGILVPDLPDDLCGIQLRKMAELFGDRAYVSLCLRRRQ 156
             R  K +C L   D++A    ++ I++P          L ++ E      ++ + +    
Sbjct: 126  RRAKKGDCHLSLADLLADVRDLMLIVMPGEDGSDLPPLLSRLGEAAPGAVWLGVDMPFSG 185

Query: 157  NDQLRLHEISNLATRFKVRTVVTNDVLFHEPGRRQLQDIVTCIRTRTTIDEVGFERERHA 216
             D+ RL  +  +A    V  +  NDVL+  P  R LQDI+TC+R  TTI E G     +A
Sbjct: 186  ADRRRLAALKAIARTACVPLLAVNDVLYATPEERDLQDILTCVRESTTIAEAGRRLLANA 245

Query: 217  DRYLKPPEEMERLFPRYRQALARTMEIVRRCTFSLEELTYQYPEEAIVPGKDAQASLEHY 276
            +R+LKP  EM RLF    +A+A +  ++ R  F+L+EL Y YPEE + PG   QA LE  
Sbjct: 246  ERHLKPAAEMARLFRDAPEAVAESGALLARIDFTLKELKYDYPEEPVPPGWTPQAWLEEL 305

Query: 277  VWQCVPDRYPEGLPPDVLKVVRHELDLIRTMKYAPYFLTVFSIVRYARSQGILCQGRGSA 336
             W+C   RYPEG+P  V K++R EL LIR +KYAPYFLT+  IVR+A SQGILCQGRGSA
Sbjct: 306  TWRCAAVRYPEGVPEKVEKLLRDELALIRKLKYAPYFLTIHDIVRFAESQGILCQGRGSA 365

Query: 337  ANSAVCYILGITSIDPSTNDLLFERFVSQERDEPPDIDVDFEHERREEVIQWIYRTYTRE 396
            ANSAVCY+LGIT++DP+ NDLLF RF+S+ER EPPDIDVDFEH RREEVIQ IY  Y R 
Sbjct: 366  ANSAVCYVLGITAVDPADNDLLFARFISEERREPPDIDVDFEHARREEVIQHIYDKYGRH 425

Query: 397  KAALCATVTRYRARGAIRDVGKALGLPEDVIKALSSGMW-SWSEEVCDRNVRELNLNPDD 455
            +A + ATV  YR R AIRDVGKALGL EDV   L+S  W SW  ++ D ++RE  L+P +
Sbjct: 426  RAGIVATVIHYRPRSAIRDVGKALGLTEDVTARLASTQWGSWGRDISDAHIREAGLDPSN 485

Query: 456  RRLVLTLKLAQQLMGAPRHLGQHPGGFVLTHDRLDDLVPIEPATMKDRQIIEWDKDDVEA 515
              +   ++LA +LMGAPRHL QH GGFVL   RLDD VPI  A M DR  IEWDKDD++ 
Sbjct: 486  PFIRRAVELAGRLMGAPRHLSQHVGGFVLARGRLDDTVPIGNAAMADRTFIEWDKDDIDV 545

Query: 516  LKFMKVDILALGMLTCMAKAFDLIREHKDRDLDLSKIEQEDSVTYAMIRKADTLGTFQIE 575
            L  MKVD+LALGMLTC+ KA DL+R H+  D  L+ +    +  YAM+ + D++G FQ+E
Sbjct: 546  LGLMKVDVLALGMLTCIRKALDLMRNHEGIDWGLADVPSGQADVYAMLSRGDSIGVFQVE 605

Query: 576  SRAQMAMLPRLKPRTFYDLVVQVAIVRPGPIQGDMVHPYLRRREGKEAVEYPTP------ 629
            SRAQ+ MLPRLKP+ FYDLV+QVAIVRPGPIQGDMVHPYLRRR G E V+YP+P      
Sbjct: 606  SRAQINMLPRLKPQKFYDLVIQVAIVRPGPIQGDMVHPYLRRRSGLEKVDYPSPAPHLGD 665

Query: 630  --ELEAVLGKTLGVPLFQESAMRVAMVCAGFTGGEADQLRKSMATFKFTGGVSQFKDKLV 687
              EL +VL KTLGVPLFQE AM++AMV A F+  EA++LR++MATF+  G + +F+  +V
Sbjct: 666  KDELHSVLDKTLGVPLFQEQAMKLAMVAARFSAKEANRLRRAMATFRNLGTIQEFESMMV 725

Query: 688  SGMVRNGYAPEFAEKTFSQLEGFGSYGFPESHAASFALIAYASSYIKCHYPEAFCAALIN 747
              MV  GY  +FA + F Q++GFGSYGFPESHAASFA + Y SSYIKC +P AF  AL+N
Sbjct: 726  ERMVARGYKRDFAARCFEQIKGFGSYGFPESHAASFAKLVYISSYIKCRHPAAFACALLN 785

Query: 748  SQPMGFYAPAQIVGDARAHGVEVRPVCINRSRWDCTLERIGNSDRHAVRLGFRQVKGLAV 807
            +QPMGFYAPAQIV DA  HGVEVRP+ +N S  D TLER  +    A+RLGFRQV G   
Sbjct: 786  AQPMGFYAPAQIVRDAHEHGVEVRPIDVNFSHHDNTLER-RDDGALALRLGFRQVDGFHA 844

Query: 808  ADAARVVAARMNNAFVSVDDMWRRSGVPSEALVQLAKADAFLPSLKLERRDALWAIKAL- 866
                R+ AAR +  F S++D+ RR+ +P+ A+  LA ADAF  S+ L+RR ALW  + L 
Sbjct: 845  EWGERLAAAR-SGPFASIEDLARRARLPTRAVKLLADADAF-RSMDLDRRAALWHARRLP 902

Query: 867  RDEPLPLFAAAAEREMAAIAEQQEPGVALRQMTDGHNVIEDYSHTGLTLRQHPIAFLRKD 926
             D+ LPLFAAA  RE+       E  V L +M    +++ DY    L+L+ HP+  LR  
Sbjct: 903  DDDALPLFAAADARELGV-----EEEVTLPRMARSEHIVADYQTVRLSLKGHPMGELRDH 957

Query: 927  LSVRNIITCAEAMNSRDGRWVYTAGLVLVRQKPGSAKGVMFITIEDETGPANLVVWPTLF 986
                 I+TCAE    +DG +V  AG+VLVRQ+PG+ K + FITIEDETG  N+V+W    
Sbjct: 958  FRKERILTCAETSALKDGAFVRNAGVVLVRQRPGNGKAI-FITIEDETGITNIVLWERTL 1016

Query: 987  EKRRRAVLGSSMMAINGRIQREGE-VVHLVAQQLFDLSGDLTGLADRDEEFKLPAGRGDE 1045
            E+ RR V+G+ ++ + GRIQ+  E VVHL+AQ+L D + DL  L  R  + ++   R DE
Sbjct: 1017 ERFRREVMGARLLLVEGRIQKSPEGVVHLMAQRLTDRTADL-ALLSRVRQPRMEVARADE 1075

Query: 1046 FAHGSPGSSDTRD 1058
            FAH        RD
Sbjct: 1076 FAHPQHPRKHPRD 1088