Pairwise Alignments

Query, 1087 a.a., DNA polymerase III, alpha chain from Agrobacterium fabrum C58

Subject, 1023 a.a., DNA polymerase from Pseudomonas simiae WCS417

 Score =  917 bits (2370), Expect = 0.0
 Identities = 502/1038 (48%), Positives = 670/1038 (64%), Gaps = 18/1038 (1%)

Query: 1    MSYAELQVTTHFSFLRGASSAQELFETAKALGIEALGVVDRNSLAGIVRALEASRATGLR 60
            MSYAEL   ++FSF RGASSA ELFE AK  G  AL + D  +L+GIVRA +A++A  L 
Sbjct: 1    MSYAELHCLSNFSFQRGASSALELFERAKRQGYSALAITDECTLSGIVRAWQAAKAVELP 60

Query: 61   LVIGCRLDLADGMSVLVYPTDRAAYSRLTRLITLGKSRGGKNNCLLHWDDVVAYTDGMIG 120
            L+IG  + + +G  +++   D + Y  L RLITL + R  K +  L  +D      G++ 
Sbjct: 61   LIIGSEVRIDNGPKLVLLVEDLSGYQHLCRLITLARRRAEKGSYRLLREDFDQPLPGLLA 120

Query: 121  ILVPDLPDDLCGIQLRKMAELFGDRAYVSLCLRRRQNDQLRLHEISNLATRFKVRTVVTN 180
            + V +  D     Q   +   FG+R ++++ L   QND   L +   LA    +  V   
Sbjct: 121  LWVAEDSDTQADSQW--LRRTFGERLWLAVHLHCGQNDARHLEQRLQLAASLHLPAVACG 178

Query: 181  DVLFHEPGRRQLQDIVTCIRTRTTIDEVGFERERHADRYLKPPEEMERLFPRYRQALART 240
            DV  H  GRR LQD +T IR    + E G     + +R+L+  + +  L+P+    L  T
Sbjct: 179  DVHMHARGRRALQDTMTAIRHHVPVAEAGTRLHPNGERHLRSLDALAALYPQ--PLLDET 236

Query: 241  MEIVRRCTFSLEELTYQYPEEAIVPGKDAQASLEHYVWQCVPDRYPEGLPPDVLKVVRHE 300
              I RRCTF L +L Y YP E +  G +AQ+ L     + +  R+P+G+     + +  E
Sbjct: 237  ETIARRCTFDLSQLRYHYPHELVPAGHNAQSWLRAVTEEGIAKRWPQGVDAKTAQQINSE 296

Query: 301  LDLIRTMKYAPYFLTVFSIVRYARSQGILCQGRGSAANSAVCYILGITSIDPSTNDLLFE 360
            L+LI  + Y  YFLTV  IV++ARS+ ILCQGRGSAANSAVCY LGIT IDPS   +LFE
Sbjct: 297  LELISELGYESYFLTVHDIVQFARSRSILCQGRGSAANSAVCYALGITEIDPSLTSMLFE 356

Query: 361  RFVSQERDEPPDIDVDFEHERREEVIQWIYRTYTREKAALCATVTRYRARGAIRDVGKAL 420
            RF+S+ER+EPPDIDVDFEHERREEV+Q++++ Y R +AAL A V+ Y A GA+RDV KAL
Sbjct: 357  RFLSRERNEPPDIDVDFEHERREEVLQYVFQRYGRTRAALTAVVSSYHASGAVRDVAKAL 416

Query: 421  GLPEDVIKALSS--GMWSWSEEVCDRNVRELNLNPDDRRLVLTLKLAQQLMGAPRHLGQH 478
            GLP D I AL+   G WS +    DR +RE   +PD   L   L L QQL+G PRHL QH
Sbjct: 417  GLPPDQINALADCCGRWSDAAPPLDR-LREGGFDPDSPILRRVLTLTQQLIGFPRHLSQH 475

Query: 479  PGGFVLTHDRLDDLVPIEPATMKDRQIIEWDKDDVEALKFMKVDILALGMLTCMAKAFDL 538
            PGGFV++   LD LVP+E A M +R II+WDKDD++A+  +KVDILALGML+ + + FDL
Sbjct: 476  PGGFVISEYPLDTLVPVENAAMAERTIIQWDKDDLDAVGLLKVDILALGMLSAIRRCFDL 535

Query: 539  IREHKDRDLDLSKIEQEDSVTYAMIRKADTLGTFQIESRAQMAMLPRLKPRTFYDLVVQV 598
            +R H++RDL L+ I +ED  TYAMI KADT+G FQIESRAQM+MLPRLKP+ FYDLV++V
Sbjct: 536  LRRHRNRDLALATIPKEDPATYAMISKADTIGVFQIESRAQMSMLPRLKPQKFYDLVIEV 595

Query: 599  AIVRPGPIQGDMVHPYLRRREGKEAVEYPTPELEAVLGKTLGVPLFQESAMRVAMVCAGF 658
            AIVRPGPIQG MVHPYLRRR  +E   YP+PEL+ VL +TLG+PLFQE  M++AMV A +
Sbjct: 596  AIVRPGPIQGGMVHPYLRRRNKEEETTYPSPELKVVLERTLGIPLFQEQVMQIAMVAADY 655

Query: 659  TGGEADQLRKSMATFKFTGGVSQFKDKLVSGMVRNGYAPEFAEKTFSQLEGFGSYGFPES 718
              GEADQLR+SMA +K  GG+   +++L +GM++NGY+  FA + F Q++GFGSYGFPES
Sbjct: 656  GPGEADQLRRSMAAWKRHGGLEPHQERLRTGMLKNGYSEAFAAQIFEQIKGFGSYGFPES 715

Query: 719  HAASFALIAYASSYIKCHYPEAFCAALINSQPMGFYAPAQIVGDARAHGVEVRPVCINRS 778
            HAASFAL+ YAS ++KCH P AF  ALINS PMGFY+P QI+ DAR H +++RPV +  S
Sbjct: 716  HAASFALLTYASCWLKCHEPAAFACALINSWPMGFYSPDQILQDARRHRLQIRPVDVQAS 775

Query: 779  RWDCTLERIGNSDRHAVRLGFRQVKGLAVADAARVVAARMNNAFVSVDDMWRRSGVPSEA 838
             WDC+LE I  + + A+R+G R + G    DA R+ AAR   AF  + D+  R+G+ + A
Sbjct: 776  DWDCSLEPIDGA-QPAIRMGLRMISGFREEDARRIEAARHRRAFSDIADLDDRAGLDARA 834

Query: 839  LVQLAKADAFLPSLKLERRDALWAIKALRDEPLPLFAAAAEREMAAIAEQQEPGVALRQM 898
               LA A A L +L   R  A W +  +  + L LF        A +    E  V L   
Sbjct: 835  QALLADAGA-LRALAGNRHKARWEVAGVHKQ-LGLF--------AGLPSPDEAVVELPSP 884

Query: 899  TDGHNVIEDYSHTGLTLRQHPIAFLRKDLSVRNIITCAEAMNSRDGRWVYTAGLVLVRQK 958
            T G ++  DY+  G TL  HP+A LR +L  R   +  E M    GR V  AGLV  RQ+
Sbjct: 885  TVGEDLHADYATVGTTLGPHPLALLRAELRKRRCRSSQELMAVEHGRNVSVAGLVTGRQR 944

Query: 959  PGSAKGVMFITIEDETGPANLVVWPTLFEKRRRAVLGSSMMAINGRIQREGEVVHLVAQQ 1018
            PG+A GV F+T+EDE G  N+VVW  L E++R+A++GS +M ++GR +  GEV HL+A +
Sbjct: 945  PGTASGVTFVTLEDEFGNLNVVVWRDLAERQRQALVGSRLMKVDGRWEAVGEVRHLIAGR 1004

Query: 1019 LFDLSGDLTGLADRDEEF 1036
            L DL+  L G+  R  +F
Sbjct: 1005 LTDLTPLLEGITVRSRDF 1022