Pairwise Alignments

Query, 1087 a.a., DNA polymerase III, alpha chain from Agrobacterium fabrum C58

Subject, 1173 a.a., DNA polymerase III subunit alpha from Pseudomonas simiae WCS417

 Score =  358 bits (918), Expect = e-102
 Identities = 281/1085 (25%), Positives = 484/1085 (44%), Gaps = 95/1085 (8%)

Query: 2    SYAELQVTTHFSFLRGASSAQELFETAKALGIEALGVVDRNSLAGIVRALEASRATGLRL 61
            S+  L++ T +S + G    + L +T   + + A+ V D+N++  +V+  + +   G++ 
Sbjct: 4    SFVHLRLHTEYSLVDGLVRIKPLVKTLVGMNMPAVAVTDQNNMCSLVKFYKNAMGAGIKP 63

Query: 62   VIGCRLDLADG------MSVLVYPTDRAAYSRLTRLITLGKSRGGKNNCLLHWDDVVAYT 115
            + G  L L++         + +   +   Y  LT LI+ G   G +N  ++   + VA  
Sbjct: 64   ICGADLWLSNKDPDNPLSRISLLAMNGVGYRNLTELISRGFIDGQRNGSIIIEREWVAEA 123

Query: 116  -----------DGMIGILVPDLPDDLCGIQLRKMAELFGDRAYVSLCLRRRQNDQLRLHE 164
                       +G IGI +         +  ++  ++F DR Y+ +    R ND+  LH 
Sbjct: 124  SEGLIMLSAAKEGEIGIALLGGNPQEAEVLAKEWMQVFPDRFYLEVQRTNRPNDEEHLHA 183

Query: 165  ISNLATRFKVRTVVTNDVLFHEPGRRQLQDIVTCIRTRTTIDEVGFERERHADRYLKPPE 224
               LA +     V TNDV F +    +  +   CI     +D+    +    ++YLK  E
Sbjct: 184  AVALADKLGAPLVATNDVRFIKKEDFEAHETRVCIGEGRALDDPRRSKNYSEEQYLKSAE 243

Query: 225  EMERLFPRYRQALARTMEIVRRCTFSLEELTYQYPEEAIVPGKDAQASLEHYVWQCVPDR 284
            EM  LF    +AL  ++EI +RC   ++   +  P   I  G           +  + +R
Sbjct: 244  EMAELFSDLPEALENSVEIAKRCNIEVKLGKHFLPNFPIPDGMTIDEYFRKVSFDGLEER 303

Query: 285  YPEGLPPDVLKV-----------VRHELDLIRTMKYAPYFLTVFSIVRYARSQGI-LCQG 332
                LP D  +            +  ELD+I  M +  YFL V   +++A++ G+ +  G
Sbjct: 304  LSVLLPKDTTEDYEAKRQVYVDRLNFELDIIIQMGFPGYFLIVMDFIQWAKNNGVPVGPG 363

Query: 333  RGSAANSAVCYILGITSIDPSTNDLLFERFVSQERDEPPDIDVDFEHERREEVIQWIYRT 392
            RGS A S V Y+  IT +DP   DLLFERF++ ER   PD DVDF  + R+ VI+++   
Sbjct: 364  RGSGAGSLVAYVQKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDGRDRVIEYVAEK 423

Query: 393  YTREKAALCATVTRYRARGAIRDV----GKALGLPEDVIKALSSGMWSWSEEVCDRNVRE 448
            Y R   +   T     A+  IRDV    GK+ GL + + K +   +    E+  ++    
Sbjct: 424  YGRNAVSQIITFGSMAAKAVIRDVARVQGKSYGLADRLSKMIPFEVGMTLEKAYEQEEIL 483

Query: 449  LNLNPDDRRLVLTLKLAQQLMGAPRHLGQHPGGFVLTHDRLDDLVPIEPATMKDRQIIEW 508
             +    D        +A++L G  R++G+H GG V+   +L D  PI         + ++
Sbjct: 484  RDFIKIDEEAAEIWDMARKLEGVVRNVGKHAGGVVIAPTKLTDFSPIYCDEEGGGLVTQF 543

Query: 509  DKDDVEALKFMKVDILALGMLTCMAKAFDLIREHK----DRDLDLSKIEQEDSVTYAMIR 564
            DKDDVEA   +K D L L  LT +  A   I   +    +  LD++ I  +D  TY +++
Sbjct: 544  DKDDVEAAGLVKFDFLGLRTLTIIDWALKTINRDRAKVNEEPLDIAFIPLDDKPTYTLLQ 603

Query: 565  KADTLGTFQIESRAQMAMLPRLKPRTFYDLVVQVAIVRPGPIQGDMVHPYLRRREGKEAV 624
            KA+T   FQ+ESR    ++ +LKP    DL+  VA+ RPGP+Q  MV  ++ R+ G+  +
Sbjct: 604  KAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGPLQSGMVDDFINRKHGRAEL 663

Query: 625  EYPTPE-----LEAVLGKTLGVPLFQESAMRVAMVCAGFTGGEADQLRKSMATFKFTGGV 679
             YP  +     L+ VL  T G+ L+QE  M++A V AG+T G AD LR++M   K    +
Sbjct: 664  AYPHSDYQYEGLKPVLAPTYGIILYQEQVMQIAQVMAGYTLGGADMLRRAMGK-KKPEEM 722

Query: 680  SQFKDKLVSGMVRNGYAPEFAEKTFSQLEGFGSYGFPESHAASFALIAYASSYIKCHYPE 739
            ++ +   + G   N    + A   F  +E F  YGF +SH+A++ L++Y ++++K HYP 
Sbjct: 723  AKQRGGFIEGCATNNIDADLAGNIFDLVEKFAGYGFNKSHSAAYGLVSYQTAWLKAHYPA 782

Query: 740  AFCAALINSQPMGFYAPAQIVGDARAHGVEVRPVCINRSRWDCTLERIGNSDRHAVRLGF 799
             F AA++++          ++ + R   + +    +N S +  T+     +D   +  G 
Sbjct: 783  PFMAAVLSADMHNTDKVVTLIEEVRTMKLRLDAPDVNASEFKFTV-----NDEGRIIYGL 837

Query: 800  RQVKGLAVADAARVVAARMNNAFVSVDDMWRRSGVPSEALVQLAKADAFLPSLKLERRDA 859
              +KG+       +  AR +  F  + D   R  +     +     D  + S  L+R   
Sbjct: 838  GAIKGVGEGPVEAITEARQDGPFKDLFDFCARVDLKR---INKRTLDGLIRSGALDRLGP 894

Query: 860  LWAIKALRDEPLPLFAAAAEREMAAIAEQQEPGVALRQMT-----DGHN-------VIED 907
             +      DEP   + A  +R  A +    E  +   + T      GH        V ED
Sbjct: 895  YF-----HDEP-KAYQANIDRNRAVLLTAMEEAIKAAEQTARTHDSGHADLFGGLFVEED 948

Query: 908  ---YSH-------------------TGLTLRQHPIAFLRKDLSVRNIITCAEAMNSRDGR 945
               Y +                    GL L  HPI     ++         +   +RD +
Sbjct: 949  ADVYGNHRKAKELTLKERLKGEKDTLGLYLTGHPIDEYEGEIRRFARQRIIDLKPARDTQ 1008

Query: 946  WVYTAGLVLVRQKPGSAKG--VMFITIEDETGPANLVVWPTLFEKRRRAVLGSSMMAING 1003
             V  AG+++  +   + KG  + FIT++D +G     ++   F   +  +   +M+ + G
Sbjct: 1009 TV--AGMIIALRVMKNKKGDKMGFITLDDRSGRIEASLFADAFHSAQSLLQTDAMVVVEG 1066

Query: 1004 RIQRE 1008
             +  +
Sbjct: 1067 EVSND 1071