Pairwise Alignments

Query, 310 a.a., ABC transporter, substrate binding protein (nitrate/sulfonate) from Agrobacterium fabrum C58

Subject, 328 a.a., putative ABC transporter, periplasmic substrate-binding protein from Pseudomonas putida KT2440

 Score =  127 bits (318), Expect = 5e-34
 Identities = 86/295 (29%), Positives = 144/295 (48%), Gaps = 8/295 (2%)

Query: 12  SLALSVAATVASAQDVLRVGDQRGNARAVMDASGVLKDV----PYQVEWSEFANAAPLLE 67
           S  L  +  +A     LR+G Q+ N+  ++  SG L+        +V W EFA    LLE
Sbjct: 25  SALLPWSEAIADDARTLRIGYQKFNSINILKGSGALEKALAPQGVKVSWHEFAAGPQLLE 84

Query: 68  ALAAEALDAGSVGDAPLTFAAARGVKAKAIFATK--YEGNAIIVKNDAPYQGIKDLVRKK 125
           AL+  A+D G   DAP  FA A G     + A +    G  ++V+       ++DL  K+
Sbjct: 85  ALSTGAIDLGHAADAPSVFAQAAGKPVVYLAAEQPYPRGIGLVVREQDHLASVQDLKGKR 144

Query: 126 VAFVKGSAGHALILQSLKEAGLKEDAITPVFL-PPAEATLALTNGSVDAVSLWEPYISFA 184
           VA  +G     L+  +L++AGL    ITP ++   A+A  AL +GSV AV+LW+P+++ A
Sbjct: 145 VATGRGWNAQYLLAVALQQAGLSYKDITPAYVNNAADAVAALQSGSVQAVTLWDPFLAAA 204

Query: 185 TLKSGARIIVDGKNYP-SLSYFIASEAAIEGKRDILKDFVARSAKARAWGLEHPQEYSKI 243
             + G + + DG     + ++++++ +  +  R +LK F A   K   W    P E + +
Sbjct: 205 ESQPGLKNLRDGSGLSNNRTFYLSTASFADQHRALLKTFFAELGKVSQWANAKPAEVAAL 264

Query: 244 IAQLVKIPDDVALGKQTRERHAPQLINADVEKLQQSTIDLYYGAGIIDKKLKASD 298
           +A  + I   V      R  +    I   +   QQ   D + G G+I +KL+ ++
Sbjct: 265 LAPQLGISTQVLEVASERRNYNAVAITPQIVAEQQKLADTFQGLGLIPRKLQVAE 319