Pairwise Alignments

Query, 310 a.a., ABC transporter, substrate binding protein (nitrate/sulfonate) from Agrobacterium fabrum C58

Subject, 321 a.a., putative Periplasmic aliphatic sulfonate-binding protein from Pseudomonas putida KT2440

 Score =  208 bits (529), Expect = 2e-58
 Identities = 120/310 (38%), Positives = 188/310 (60%), Gaps = 7/310 (2%)

Query: 1   MKTKSIIRLALSLALSVAATVASAQDVLRVGDQRGNARAVMDASGVLKDVPYQVEWSEFA 60
           ++TK ++ +A++L L+  A+ AS +  LR+GDQ+GN RA ++A+  L+D+PY + W+EF 
Sbjct: 3   IRTK-LLTVAVALLLAGHAS-ASERLTLRIGDQKGNMRAQLEAADALRDLPYDIRWAEFP 60

Query: 61  NAAPLLEALAAEALDAGSVGDAPLTFAAARGVKAKAIFATKYE--GNAIIVKNDAPYQGI 118
            AAPL EAL A A+DAG +GDAPL F  A G   KAI   K +  G A++V+ +AP +  
Sbjct: 61  AAAPLAEALNAGAIDAGIIGDAPLLFVLASGAPVKAIAVDKSDPYGTALLVRPEAPLRSA 120

Query: 119 KDLVRKKVAFVKGSAGHALILQSLKEAGLKEDAITPVFLPPAEATLALTNGSVDAVSLWE 178
            +L  K++A  +GS GH L L++L +AGL E  +   FL P +A +AL NGSVDA S WE
Sbjct: 121 AELKGKRIATGRGSIGHHLALKALAQAGLTEKDVEFRFLGPVDAKIALANGSVDAWSTWE 180

Query: 179 PYISFATLKSGARIIVDGKNYPS-LSYFIASEAAIE--GKRDILKDFVARSAKARAWGLE 235
           PY + A L    R++V+G+   +  S+  A++ A+E  G+R  L+D++ R A A+ W  +
Sbjct: 181 PYTALAELSGQGRVLVNGRGLSTGNSFLAATDKALEEPGRRAALQDYLNRLAAAQVWANQ 240

Query: 236 HPQEYSKIIAQLVKIPDDVALGKQTRERHAPQLINADVEKLQQSTIDLYYGAGIIDKKLK 295
           H   YSK +A ++  P + A  +  R +   Q+I+      QQ T D Y+  G++ ++L 
Sbjct: 241 HLDTYSKTLAAIIGFPVEAARLQFERRQLRWQVIDTQTVTEQQDTADFYHTHGLMTERLD 300

Query: 296 ASDLLDDSFS 305
            +      F+
Sbjct: 301 VAPTFATGFT 310