Pairwise Alignments

Query, 310 a.a., ABC transporter, substrate binding protein (nitrate/sulfonate) from Agrobacterium fabrum C58

Subject, 312 a.a., putative Periplasmic aliphatic sulfonate-binding protein from Pseudomonas putida KT2440

 Score =  179 bits (453), Expect = 1e-49
 Identities = 114/308 (37%), Positives = 169/308 (54%), Gaps = 11/308 (3%)

Query: 7   IRLALSLALSVAAT---VASAQDVLRVGDQRGNARAVMDASGVLKDVPYQVEWSEFANAA 63
           +R    LA +V AT   +A+A   L VGDQ  NARAVM+A+GVL+ +PY +EW +F   +
Sbjct: 1   MRYFKQLAATVLATTFSLAAAAQTLVVGDQSYNARAVMEAAGVLEQLPYTLEWKQFTAGS 60

Query: 64  PLLEALAAEALDAGSVGDAPLTFAAARG--VKAKAIFATKYEGNAIIVKNDAPYQGIKDL 121
           P+ EAL   +LD G +GDAP  F  A G  +K  A+     EG AI+ + D+P   ++DL
Sbjct: 61  PVAEALNVGSLDIGLLGDAPPLFLGALGAPIKVIAVSRQNLEGVAILARKDSPIHSLQDL 120

Query: 122 VRKKVAFVKGSAGHALILQSLKEAGLKEDAITPVFLPPAEATLALTNGSVDAVSLWEPYI 181
             K+ A  KGS    L+  +L +AG+  DA+   +L   +A+ AL  GSVD ++ WEPY+
Sbjct: 121 RGKRAAIWKGSWSQQLLFSALDKAGVPRDAVELRYLSALDASHALDGGSVDVIATWEPYV 180

Query: 182 SFATLKSGARIIVDGKN-YPSLSYFIASEAAIEGKRDILKDFVARSAKARAWGLEHP--- 237
           +    + GAR++       P+ S+ +A+  A+E KR  + DF+ R  KAR W L  P   
Sbjct: 181 T-QQERQGARVLATADGVIPAQSFVVANSKAVELKRAQIADFLQRLKKARDWTLSAPANT 239

Query: 238 QEYSKIIAQLVKIPDDVALGKQTRERHAPQLINADVEKLQQSTIDLYYGAGIIDKKLKAS 297
           + Y+   A+L +   D+A     R R     ++  V    Q T+D + G G+I K   A 
Sbjct: 240 EAYADAWAKLTRADRDIARAWFARARTDLAPLDPQVIADAQKTVDFFSGLGLI-KAYPAQ 298

Query: 298 DLLDDSFS 305
            L D SF+
Sbjct: 299 SLFDTSFN 306