Pairwise Alignments

Query, 333 a.a., ABC transporter, membrane spanning protein (peptide) from Agrobacterium fabrum C58

Subject, 313 a.a., nickel ABC transporter permease subunit from Pseudomonas putida KT2440

 Score =  203 bits (516), Expect = 5e-57
 Identities = 122/317 (38%), Positives = 173/317 (54%), Gaps = 15/317 (4%)

Query: 14  RSLLRNLIQAVPTMFVIVTLGFFVLQLAPGDAA-DYMAAESGAATQETVADIRRAFGLDL 72
           R +L  L   VP M     L F +L L   D A DY+       T   +A++R   GLD 
Sbjct: 3   RYILLRLALLVPVMLGASLLVFVLLHLGSTDPALDYLRLSHIPPTDAAIAEVRHTLGLDR 62

Query: 73  PLLDQLANYYTSLAHFSLGISPRYGVPVADLIMERLPGTLTLMVLAIVIALLVGIAAGTI 132
           PL  Q  ++  +  H   GIS   G PV D ++  LP TL L  LA+   LL+ I  G +
Sbjct: 63  PLYAQYLSWLWNAVHLDFGISYITGRPVLDDLLYYLPATLQLGGLALACTLLLSIPLGLL 122

Query: 133 MALNATRAADRILSVASLLFYSVPTFWIGLIFIIVFSVKLGWLPAGGMKTIGASSGGFGW 192
            A    R  D  +   + L  S+P FW+  + I +FS+ LGWLP  G        GG G 
Sbjct: 123 AARWQGRWPDHAVRAVTFLGVSMPNFWLAFLLIALFSLWLGWLPPLGR-------GGAGH 175

Query: 193 LIDRVSYALLPATSLALYYMAIYARLTRSSILEVIGQDHVRTAKAKGLAPRQVVLRHVLR 252
           L+       +P  ++AL  M+I ARL R+S+L+  GQ HV  A+A+GL  R V   H+LR
Sbjct: 176 LV-------MPVLAIALMSMSINARLLRASLLDAGGQRHVTYARARGLPERHVWRDHILR 228

Query: 253 NALIPITTVAGIHVAGILGGAIVIETVFSWPGMGRLAFDAVMAREYTLLLGIMLVSSVLV 312
           NA +P+ T  G+H+  +LGGA+VIET+F+WPG+GR A  AV+ R++ ++    L+ + L+
Sbjct: 229 NAWLPLVTATGMHIGELLGGALVIETIFAWPGVGRFAVSAVLNRDFPVMQCFTLLLTGLL 288

Query: 313 ICVNAIVDIIQAALDPR 329
           +  N IVD+  A LDPR
Sbjct: 289 MICNLIVDVCYAWLDPR 305