Pairwise Alignments

Query, 555 a.a., ABC transporter, nucleotide binding/ATPase protein (peptide) from Agrobacterium fabrum C58

Subject, 530 a.a., microcin C ABC transporter ATP-binding protein YejF from Dickeya dianthicola ME23

 Score =  416 bits (1070), Expect = e-121
 Identities = 236/560 (42%), Positives = 338/560 (60%), Gaps = 46/560 (8%)

Query: 2   AIPLLGVRDLSVRYHSRSGEAVAVENLSFDIAAGEAVALVGESGCGKSTTALALSNLLPD 61
           A PLL +RDLS+ + +   +   V+ +S  I AGE +ALVGESG GKS TAL++  LLP 
Sbjct: 3   AHPLLEIRDLSIAFRNGGQQRQVVDQVSLSIEAGETLALVGESGSGKSVTALSVLRLLPS 62

Query: 62  E--ASSSGEVTFDGLDLFRLPPKAWRPILGPRIGMIFQEPMSALNPVYTVGDQIAEVLHA 119
                  G++ F G  L     +  R + G RI MIFQEPM +LNP++T+  Q+AEVL  
Sbjct: 63  PPVVYLHGDILFAGESLLNASEQRLRQVRGDRIAMIFQEPMVSLNPLHTIEKQLAEVLSL 122

Query: 120 HERLSRKAARSRVLELLDLVSMPEPHRRIASYPHELSGGQRQRAMIAQAIALTPLLLIAD 179
           H  + R AAR  ++  L+ V + +  RR+A +PH+LSGG+RQR MIA A+   P LLIAD
Sbjct: 123 HRGMRRDAARGEIVGCLERVGIRQAARRLADFPHQLSGGERQRVMIAMALLTQPDLLIAD 182

Query: 180 EPTTALDSTIQSQILELIDRLRRDLSMGLLLISHDLTLVSRWTDRVVVMHNGKRMEELKA 239
           EPTTALD T+Q+QIL+L++ L+++L+MGLL I+H+L +V R  DRV VM  G+ +E+ + 
Sbjct: 183 EPTTALDVTVQAQILDLLNELKQELNMGLLFITHNLNIVRRLADRVAVMQAGRCVEQNRT 242

Query: 240 EHLFQESQHPYTKGLIGASIRLGDGRHASSERLNEIRTHRNSNGTTSFEIRSPPVAAEPR 299
             LF   QHPYT+ L+ A                                   P    P 
Sbjct: 243 RELFSAPQHPYTRQLLNAE----------------------------------PTGEAPP 268

Query: 300 TNATADALLEVEDLTVRYDPASK--------TPPAVDRVTFELLRGETLGLVGESGSGKS 351
              TA  LL+V +L V + P  +            +  ++F L RGE++GLVGESGSGKS
Sbjct: 269 LEPTASTLLDVRELGVSF-PIRRGLLRRTVGEKSVLQALSFSLRRGESIGLVGESGSGKS 327

Query: 352 SLSKALSRLIPVAGGQILFEGQDITHAGGADLRAFRGRVQMIFQDPYSSLNPRRTVGDIL 411
           +   AL RL+  + G+I F+GQ +       +   R R+Q++FQDP  SLNPR  V  I+
Sbjct: 328 TTGLALLRLLR-SRGEIWFDGQPLHRFNHKQMLPVRRRIQVVFQDPNGSLNPRLNVEQII 386

Query: 412 DSVLHAHKYRNSADRQSRISEALDQVRLPRSAVERFPHEFSGGQRQRIAIARALIVRPSL 471
              L  H   + A++  R+ +++ +V L   +  R+P EFSGGQRQRIAIARALI++P L
Sbjct: 387 AEGLRVHHPLSPAEQTQRVIQSMQEVGLDPDSRHRYPSEFSGGQRQRIAIARALILQPEL 446

Query: 472 VICDEPVSALDVSVQAQILNLLADLKEEAGLSYLFISHDLAVVKYISDRIMVMKDGHIIE 531
           +I DEP S+LD +VQAQIL LL  L++   L+YLFISHDL VV+ +  +++V++ G ++E
Sbjct: 447 LILDEPTSSLDRTVQAQILTLLKTLQQTHQLAYLFISHDLHVVRSLCHQVIVLRHGEVVE 506

Query: 532 RGNHQNLWSNPSHEYTRKLI 551
           +G  + L+ +P  +YTR+L+
Sbjct: 507 QGECRQLFEHPQQDYTRQLL 526



 Score =  196 bits (499), Expect = 1e-54
 Identities = 110/259 (42%), Positives = 163/259 (62%), Gaps = 8/259 (3%)

Query: 303 TADALLEVEDLTVRYDPASKTPPAVDRVTFELLRGETLGLVGESGSGKSSLSKALSRLIP 362
           +A  LLE+ DL++ +    +    VD+V+  +  GETL LVGESGSGKS  + ++ RL+P
Sbjct: 2   SAHPLLEIRDLSIAFRNGGQQRQVVDQVSLSIEAGETLALVGESGSGKSVTALSVLRLLP 61

Query: 363 -----VAGGQILFEGQDITHAGGADLRAFRG-RVQMIFQDPYSSLNPRRTVGDILDSVLH 416
                   G ILF G+ + +A    LR  RG R+ MIFQ+P  SLNP  T+   L  VL 
Sbjct: 62  SPPVVYLHGDILFAGESLLNASEQRLRQVRGDRIAMIFQEPMVSLNPLHTIEKQLAEVLS 121

Query: 417 AHKYRNSADRQSRISEALDQVRLPRSA--VERFPHEFSGGQRQRIAIARALIVRPSLVIC 474
            H+       +  I   L++V + ++A  +  FPH+ SGG+RQR+ IA AL+ +P L+I 
Sbjct: 122 LHRGMRRDAARGEIVGCLERVGIRQAARRLADFPHQLSGGERQRVMIAMALLTQPDLLIA 181

Query: 475 DEPVSALDVSVQAQILNLLADLKEEAGLSYLFISHDLAVVKYISDRIMVMKDGHIIERGN 534
           DEP +ALDV+VQAQIL+LL +LK+E  +  LFI+H+L +V+ ++DR+ VM+ G  +E+  
Sbjct: 182 DEPTTALDVTVQAQILDLLNELKQELNMGLLFITHNLNIVRRLADRVAVMQAGRCVEQNR 241

Query: 535 HQNLWSNPSHEYTRKLIAA 553
            + L+S P H YTR+L+ A
Sbjct: 242 TRELFSAPQHPYTRQLLNA 260



 Score =  172 bits (436), Expect = 3e-47
 Identities = 110/264 (41%), Positives = 149/264 (56%), Gaps = 14/264 (5%)

Query: 2   AIPLLGVRDLSVRYHSRSG-------EAVAVENLSFDIAAGEAVALVGESGCGKSTTALA 54
           A  LL VR+L V +  R G       E   ++ LSF +  GE++ LVGESG GKSTT LA
Sbjct: 273 ASTLLDVRELGVSFPIRRGLLRRTVGEKSVLQALSFSLRRGESIGLVGESGSGKSTTGLA 332

Query: 55  LSNLLPDEASSSGEVTFDGLDLFRLPPKAWRPILGPRIGMIFQEPMSALNPVYTVGDQIA 114
           L  LL     S GE+ FDG  L R   K   P+   RI ++FQ+P  +LNP   V   IA
Sbjct: 333 LLRLL----RSRGEIWFDGQPLHRFNHKQMLPVRR-RIQVVFQDPNGSLNPRLNVEQIIA 387

Query: 115 EVLHAHERLSRKAARSRVLELLDLVSMPEPHRRIASYPHELSGGQRQRAMIAQAIALTPL 174
           E L  H  LS      RV++ +  V +    R    YP E SGGQRQR  IA+A+ L P 
Sbjct: 388 EGLRVHHPLSPAEQTQRVIQSMQEVGLDPDSRH--RYPSEFSGGQRQRIAIARALILQPE 445

Query: 175 LLIADEPTTALDSTIQSQILELIDRLRRDLSMGLLLISHDLTLVSRWTDRVVVMHNGKRM 234
           LLI DEPT++LD T+Q+QIL L+  L++   +  L ISHDL +V     +V+V+ +G+ +
Sbjct: 446 LLILDEPTSSLDRTVQAQILTLLKTLQQTHQLAYLFISHDLHVVRSLCHQVIVLRHGEVV 505

Query: 235 EELKAEHLFQESQHPYTKGLIGAS 258
           E+ +   LF+  Q  YT+ L+  S
Sbjct: 506 EQGECRQLFEHPQQDYTRQLLQLS 529