Pairwise Alignments

Query, 531 a.a., ABC transporter, substrate binding protein (peptide) from Agrobacterium fabrum C58

Subject, 537 a.a., Periplasmic dipeptide transport protein from Xanthobacter sp. DMC5

 Score =  360 bits (925), Expect = e-104
 Identities = 216/510 (42%), Positives = 282/510 (55%), Gaps = 11/510 (2%)

Query: 2   IKLSRRTFNAALGIGALGTAIPGISFAQTTPVRGGTARIVAASEPAMLIE-LFQNTGNAG 60
           + LSRRT  A  G   L  A      A   P  GGT   V   EPA L+  L  +     
Sbjct: 8   LALSRRTLLAGAGASLLLPA--AARRAGAAPATGGTLVAVLDPEPAGLVAGLTISAPAVA 65

Query: 61  VGSRVIEGLLKVSFDRTFKPHLAESWDISADGKTYTFHLRPGIKWHDGQPFTSADVAFSL 120
           V + + +GL++       KP LA SW+ SADG   TF LR  + WHDG PFTSADVA+SL
Sbjct: 66  VSANIFDGLVEYDEGFKLKPSLATSWETSADGTVITFRLRNDVTWHDGTPFTSADVAYSL 125

Query: 121 LTL-KETHPRRRVTFASLEKIDTPDPLTVVAQFKTPVPFLLPALSGIASPIIPKHLYEET 179
           L + K+ HPR    FA+L  +DTPDP T V +F  P P +  A +G  + I+PKHLYE T
Sbjct: 126 LEVTKKVHPRGNAVFANLTAVDTPDPYTAVLRFSRPSPVVWAAFNGTETQILPKHLYEGT 185

Query: 180 DIRANPYNAKPIGTGPYVFKEWERGSHILLERNPDYWIKDLPLLDAVVTRFIVDVSARGA 239
           +   NP N KPIGTG +VFKEW +G  I+LERNP+YW K  P LD VV R I D ++R A
Sbjct: 186 NPLTNPLNGKPIGTGAFVFKEWVKGERIVLERNPNYWDKGRPYLDRVVFRIIRDPASRAA 245

Query: 240 AFEAGDVDVGYHTPVPLDEIKRLGDDPRFGVETRGYELEGSLNQLFFRLDHPILSDLRVR 299
           A E G+       PVPL ++ R+       VETRG+E    +    F L      D+RVR
Sbjct: 246 ALETGEAQYIPLNPVPLSDVARIKASKDLVVETRGFEGPAPMYFFDFNLRREPFGDIRVR 305

Query: 300 QAFAHAINIDDYIRLVWKGYAVPSPTAIAPSMAEYHDPSIGFYAFDKAKAEALLDEAGHK 359
           QAFAHA+N       V+ G A P+   +     ++    +  Y ++ AKAEALLD AG K
Sbjct: 306 QAFAHALNRKALAETVFYGLAKPAAGPVPSYQTQFFATDLPQYDYNIAKAEALLDAAGLK 365

Query: 360 RGGDGKRFALRLTYNP-VYGPT-RVGAEFLRSAFGDIGVDVAIQSYDYATYIKSVYTDAA 417
           +G DG R  LR+ + P  YG   R   E+ + A   IGVDV +++YD  TYIK V+T+  
Sbjct: 366 KGADGVR--LRIDHIPSAYGEDYRRAGEYFKQALKRIGVDVTLRNYDLPTYIKVVFTEYD 423

Query: 418 FDIDLQHLANGYDPTDGIQRGYWSKNIKKGVPWSNHSGYSNAEVDEIFEKGSIEIDPAKR 477
           FD      +   DP  G+QR YWS+ IKKG P SN SG ++ E+D + E+   E +  KR
Sbjct: 424 FDTHSAWYSAYPDPQIGVQRRYWSQAIKKGTPSSNASGIADPEIDAVIERIQTEGNVEKR 483

Query: 478 KEYFVRFQHILHRDLPAVNLVQFQNLTLYR 507
                  Q +    LP+VNL++   LT YR
Sbjct: 484 NADIRELQRLAQVKLPSVNLLE---LTFYR 510