Pairwise Alignments

Query, 531 a.a., ABC transporter, substrate binding protein (peptide) from Agrobacterium fabrum C58

Subject, 504 a.a., diguanylate cyclase from Pseudomonas simiae WCS417

 Score =  136 bits (343), Expect = 2e-36
 Identities = 121/463 (26%), Positives = 203/463 (43%), Gaps = 26/463 (5%)

Query: 61  VGSRVIEGLLKV-SFDRTFKPHLAESWDISADGKTYTFHLRPGIKWHDGQPFTSADVAFS 119
           V + V + L++V +     +P LAESWDIS DG TYTF LR   K+ DG   T+ D AFS
Sbjct: 54  VFANVYDTLVRVDNLGTKMEPGLAESWDISKDGLTYTFKLRDA-KFSDGSAITADDAAFS 112

Query: 120 LLTLKETHPRRRVT-FASLEKIDTPDPLTVVAQFKTPVPFLLPALSGIASPIIPKHLYEE 178
           LL +++         F  +      DP T+V   KTP    +  LS +ASP +   L E+
Sbjct: 113 LLRIRDNKASLWADPFNLINTAKASDPKTLVVTLKTPA---VAFLSQLASPTV-SILSEK 168

Query: 179 --TDIRANPYNAKPIGTGPYVFKEWERGSHILLERNPDYWIKDLPLLDAVVTRFIVDVSA 236
             T +  + Y+  P+ +G +   EW +G  ++L++NP++W      LD V    + D + 
Sbjct: 169 AMTKMGEDAYSENPVTSGAFTVDEWRKGDRVILKKNPNFWQAKNVSLDGVEWVSVTDDNT 228

Query: 237 RGAAFEAGDVDVGYHTPVPLDEIKRLGDDPRFGVETRGYELEGSLNQLFFRLDHPILSDL 296
           R    +  ++D      VP   ++ L  D    +       E   + L    +H +L+  
Sbjct: 229 RMRMVQNNELDTAIF--VPFSRVEELKKDKNVVIHADPSTRE---DHLLINHEHGLLAKP 283

Query: 297 RVRQAFAHAINIDDYIRLVWKGYAVPSPTAIAPSMAEYHDPSIGFYAFDKAKAEALLDEA 356
            VRQA   AI+    ++    G    + + I P  + YH  +     +D   A+ LL++A
Sbjct: 284 EVRQALDMAIDKQSLVKTATYGQGTVAYSYI-PKGSLYHYANNLQRPYDPTAAKKLLEQA 342

Query: 357 GHKRGGDGKRFALRLTYNPVYGPTRVGAEFLRSAFGDIGVDVAIQSYDYATYIKSVYTDA 416
           G       K   L    N         A  ++     +GV   +Q  D  T    +  D 
Sbjct: 343 G------AKDLKLNYVVNAGNEADEQIAVIIKDQLAKVGVTANLQKVD-PTQSWQMLVDG 395

Query: 417 AFDIDLQHLANGYDPTDGIQRGYWSKNIKKGVPWSNHSGYSNAEVDEIFEKGSIEIDPAK 476
            +DI + +  N  D  D  Q+  +   +      +  + Y N +V  +  +  IE DP K
Sbjct: 396 EYDISVMYWTN--DILDPDQKTTFV--LGHDTNQNYMTRYKNDKVKALVAQARIEADPVK 451

Query: 477 RKEYFVRFQHILHRDLPAVNLVQFQNLTLYRKTLHNHTEDSSG 519
           R++ +V  Q +  +D+  ++L     + + RK + N  ++  G
Sbjct: 452 REQMYVELQKLAKQDVNWIDLYYSPYINISRKNVSNFLQNPLG 494