Pairwise Alignments

Query, 531 a.a., ABC transporter, substrate binding protein (peptide) from Agrobacterium fabrum C58

Subject, 542 a.a., ABC transporter, substrate-binding protein (cluster 5, nickel/peptides/opines) from Variovorax sp. SCN45

 Score =  462 bits (1189), Expect = e-134
 Identities = 237/526 (45%), Positives = 329/526 (62%), Gaps = 6/526 (1%)

Query: 11  AALGIGALGTAIPGISFAQT--TPVRGGTARIVAASEPAMLIELFQNTGNAG-VGSRVIE 67
           A+LG+ AL   +P  + A    +PVRGGT  ++   EP  L  +  + G++  + ++  E
Sbjct: 18  ASLGVAALAGPMPAWAQAPAAGSPVRGGTLTVLIDPEPPTLTTIAHSAGSSVLISAKTTE 77

Query: 68  GLLKVSFDRTFKPHLAESWDISADGKTYTFHLRPGIKWHDGQPFTSADVAFSLLTLKETH 127
           GLL   FD + +P LA +W +SADG  YTF LR G++WHDG+PFTSADVA S+  LK+ H
Sbjct: 78  GLLTYDFDLSPQPQLATAWTVSADGLQYTFTLRRGVRWHDGKPFTSADVAHSIGLLKQYH 137

Query: 128 PRRRVTFASLEKIDTPDPLTVVAQFKTPVPFLLPALSGIASPIIPKHLYEETDIRANPYN 187
           PR R TF+S+ ++ TPD  T V     PVP+LL ALS   SPI+P+HLYE     ANP N
Sbjct: 138 PRGRATFSSVAEVRTPDAYTAVLVLSKPVPYLLTALSASESPIVPRHLYESGKADANPAN 197

Query: 188 AKPIGTGPYVFKEWERGSHILLERNPDYWIKDLPLLDAVVTRFIVDVSARGAAFEAGDVD 247
             PIGTGP+VFKEW RGSH+  ERNPDYW    P +D ++ RFI D +AR AA E G+V 
Sbjct: 198 NAPIGTGPFVFKEWVRGSHVTYERNPDYWDNPKPYVDRLIVRFIPDAAARAAAIEKGEVH 257

Query: 248 VGYHTPVPLDEIKRLGDDPRFGVETRGYELEGSLNQLFFRLDHPILSDLRVRQAFAHAIN 307
           +   TPVPL +++RL   P    E  GY+   +++++ F L++P L DLRVRQA AHAIN
Sbjct: 258 LSPGTPVPLGDVERLRAKPNLVFEPNGYQYINNVSRVEFNLENPALQDLRVRQAIAHAIN 317

Query: 308 IDDYIRLVWKGYAVPSPTAIAPSMAEYHDPSIGFYAFDKAKAEALLDEAGHKRGGDGKRF 367
                + VW G     P  + P++ +++ P +     D  +AEALLD AG  RG  G   
Sbjct: 318 RQVVQKTVWYGQGQLIPGPVHPALRKFYVPDLPVLPHDVKRAEALLDAAGFVRGKAGGNL 377

Query: 368 ALRLTYNPV--YGPTRVGAEFLRSAFGDIGVDVAIQSYDYATYIKSVYTDAAFDIDLQHL 425
            L+L   P+   G  R  AE+L+ + G IG++V I S D+ATY++ VY D AFD+ +  +
Sbjct: 378 RLKLAVVPISNEGGQRT-AEYLKQSLGRIGIEVTIHSQDFATYVRRVYADRAFDLHVSVM 436

Query: 426 ANGYDPTDGIQRGYWSKNIKKGVPWSNHSGYSNAEVDEIFEKGSIEIDPAKRKEYFVRFQ 485
           +N +DPT GIQR YWSKN KKG+P+SN SGYSN EVD + E  ++EID  +R++ F  FQ
Sbjct: 437 SNTFDPTVGIQRLYWSKNFKKGLPFSNGSGYSNPEVDRLLEAAAVEIDEGRRRQAFAEFQ 496

Query: 486 HILHRDLPAVNLVQFQNLTLYRKTLHNHTEDSSGHSVDFAAAWLGS 531
             + RDLP + L+   N T+  + +  HT  + G + + A AW+G+
Sbjct: 497 RHIVRDLPDITLLAIDNYTIADRRVRGHTVSADGIAGNLAGAWIGA 542