Pairwise Alignments

Query, 435 a.a., ABC transporter, substrate binding protein (ribose) from Agrobacterium fabrum C58

Subject, 319 a.a., ribose ABC transporter, periplasmic ribose-binding subunit from Pseudomonas putida KT2440

 Score = 56.6 bits (135), Expect = 1e-12
 Identities = 64/266 (24%), Positives = 107/266 (40%), Gaps = 22/266 (8%)

Query: 56  LSNEWNTIINDAAK----RAAAVLGLPYSSATFNLNDGTAVTQAQSAAAAGAKLFLIVSA 111
           L+NE+   + D AK      A    L  +      + G  +   +    AGAK  +I  A
Sbjct: 42  LANEFFRTMEDGAKDYQKTHADEFELIANGIKNETDTGEQIRIVEQMVNAGAKALVIAPA 101

Query: 112 DGSSLKRIARTAQEGGGYVVNVGNNIPWTSPIDAGTGFAQAIVAREDGNRGGNMYEAVKY 171
           D  +L    + A + G  V+N+ N +     +    G +   V   D  +G  +      
Sbjct: 102 DSKALVSAVKKAMDQGVVVINIDNRLD--PDLLKSKGISVPFVG-PDNRKGARLVGDY-- 156

Query: 172 TIGLAVKKFGPDAKFLHITGSKGSSYDNLRTAAVKRALAEFPGVTIAGSLPGNWSAEEGQ 231
              LA +K     +   I G   ++    RTA  K A+ +   + I     GNW  ++G 
Sbjct: 157 ---LASQKLKAGDQVGIIEGVSTTTNAQQRTAGFKDAM-DAAQMKIVSVQSGNWEIDKGN 212

Query: 232 KATEDLIARHGVPNGIIAQNDGSLTGVLAALRGLKIEAGE--EVLTVGADGATDIFRAIK 289
                ++  +     ++A ND    G ++A+R     AG+  +V  VG D    I   ++
Sbjct: 213 AVAASMLNEYPDLKALLAGNDSMALGAVSAVRA----AGKTGQVQVVGYDNINAIKPMLE 268

Query: 290 AGKVAAT---AFQSPAYYGVQAVARL 312
            G+V AT   A    A YG+QA  ++
Sbjct: 269 DGRVLATLDQAASQQAVYGIQAALKM 294