Pairwise Alignments

Query, 323 a.a., conjugal transfer protein from Agrobacterium fabrum C58

Subject, 437 a.a., Type II/IV secretion system ATP hydrolase TadA/VirB11/CpaF, TadA subfamily from Variovorax sp. SCN45

 Score =  142 bits (357), Expect = 2e-38
 Identities = 99/308 (32%), Positives = 161/308 (52%), Gaps = 27/308 (8%)

Query: 7   HSRLVRKLQDALGDQLCV------ALDDATVVEIMLNPDGKLFIERLGHGVAPAGLLSPA 60
           + R ++ + DAL  +L         L+D  V +I++N    +++ R  HG+     +  A
Sbjct: 70  NDREMQLISDALTKELAGFGPLEDLLNDPAVEDILINGYQNVYVSR--HGMLERETVRFA 127

Query: 61  AAEVIIGSVAHALQS---EADDEQPIISGELPIGGHRFEGLLPPVVSGPSFTIRR-RASR 116
            +E ++  V   L       D+  P++   LP GG     + P  + G S +IR+ R   
Sbjct: 128 DSEHVMRIVRRILAPLGRRLDESNPMVDARLPDGGRINVIIEPLAIDGLSVSIRKFRKEP 187

Query: 117 LIPLDDYVKHKIMTAAQVSVLRSAIASRMNIVISGGTGSGKTTLANAVIAEIVANAPDDR 176
           L P+D  VK     A    +L  A+ +R NI++SGGT SGKT+L NA+ + I A    +R
Sbjct: 188 LTPMD-LVKLGTFDAGMAQLLEIAVRARCNILVSGGTSSGKTSLLNALASYIPAR---ER 243

Query: 177 IVILEDTAEIQCAAENAVALHT-------SDTIDMARLLKSTMRLRPDRIIVGEVRDGAA 229
           ++ +EDTAE+     + V L +       +  + +  LL++++R+RPDRIIVGEVR    
Sbjct: 244 VITIEDTAELSLGTSHVVRLESRPGGFDGTGVVSIRDLLRNSLRMRPDRIIVGEVRGAEV 303

Query: 230 LTLLKAWNTGHPGGVTTIHSNTAMSALRRLEQLTA----EVSQQPMQEVIGEAVDLIVSI 285
           + +++A NTGH G + TIH+++    L RLE L      + S+  ++  I  A+D IV I
Sbjct: 304 IEMMQAMNTGHEGSMGTIHASSPRECLYRLEMLAGFAGYQGSEVSLRRQIANAIDFIVQI 363

Query: 286 ERTGKGRR 293
            R   G+R
Sbjct: 364 GRLSGGQR 371