Pairwise Alignments

Query, 283 a.a., ABC transporter, substrate binding protein (nopaline) from Agrobacterium fabrum C58

Subject, 261 a.a., lysine / arginine / ornithine ABC transporter - periplasmic binding protein from Pseudomonas putida KT2440

 Score =  134 bits (336), Expect = 3e-36
 Identities = 80/254 (31%), Positives = 131/254 (51%), Gaps = 27/254 (10%)

Query: 29  KSITIATEGSYAPYNFKDAGGKLIGFDIDLGNDLCKRMNIECKFVEQAWDGIIPSLTAGR 88
           K + I  E +Y P+ FK   G + GFD D+GN LC+ M  +C +VEQ +DG+IP+L   +
Sbjct: 24  KPLKIGIEAAYPPFAFKQPDGSIAGFDYDIGNALCEEMKTKCTWVEQEFDGLIPALKVRK 83

Query: 89  YDAIMAAMGIQPAREKVIAFSRPYLLTPMTFLTTADSPLLKTQVAIENLPLDNITPEQKA 148
            DAI+++M I   R+K + F++ Y LTP          ++K    + +            
Sbjct: 84  IDAILSSMSITDDRKKSVDFTKRYYLTPARL-------VMKDGTTVSD------------ 124

Query: 149 ELDKFTKIFEGVKFGVQAGTSHEAFMKQMM--PSVQISTYDTIDNVVMDLKAGRIDASLA 206
            LD+     +G K GVQ G+ H+ F K+++      +  Y T + + +D+ AGR+D ++A
Sbjct: 125 SLDE----LKGKKIGVQRGSIHDRFAKEVLGAKGATVVPYGTQNEIYLDVAAGRLDGTVA 180

Query: 207 SVSFLKPLTDKPD-NKDLKMFGPRMTGG-LFGKGVGVGIRKEDADLKALFDKAIDAAIAD 264
             + L+    K D  K     GP  T    FG G+G+ +RK D       + AIDA  A+
Sbjct: 181 DATLLEDGFLKTDAGKGFAFVGPAFTDAKYFGDGIGIAVRKGDKANVDRINAAIDAIRAN 240

Query: 265 GTVQKLSQQWFGYD 278
           G  +++  ++F +D
Sbjct: 241 GKYKEIESKYFNFD 254