Pairwise Alignments

Query, 283 a.a., ABC transporter, substrate binding protein (nopaline) from Agrobacterium fabrum C58

Subject, 250 a.a., L-lysine and D-lysine ABC transporter, substrate-binding component (from data) from Pseudomonas putida KT2440

 Score =  131 bits (330), Expect = 1e-35
 Identities = 83/273 (30%), Positives = 132/273 (48%), Gaps = 31/273 (11%)

Query: 8   ALAAVVTGVLLAAGPTQAKDYKSITIATEGSYAPYNFKDAGGKLIGFDIDLGNDLCKRMN 67
           ++A +    LL AG   A+   ++  ATEG+Y P+N+ DA  KL GFD+D+ + LC++M 
Sbjct: 4   SMALLGACALLLAGAASAE---TLRFATEGAYPPFNYVDADNKLHGFDVDITHALCEQMK 60

Query: 68  IECKFVEQAWDGIIPSLTAGRYDAIMAAMGIQPAREKVIAFSRPYLLTPMTFLTTADSPL 127
           +EC  V Q W+GIIP+L A +YDAI+A+M     R K IAF+  Y  TP+T     DS  
Sbjct: 61  VECTLVAQDWEGIIPALMARKYDAIVASMIDTEERRKKIAFTDHYYRTPLTVAVAKDS-- 118

Query: 128 LKTQVAIENLPLDNITPEQKAELDKFTKIFEGVKFGVQAGTSHEAFMKQM--MPSVQIST 185
                                ++D     F G   G Q+ ++   + + +       +  
Sbjct: 119 ---------------------KIDSAQTDFVGYTVGAQSSSTQAIYAEDVYGKAGADVKL 157

Query: 186 YDTIDNVVMDLKAGRIDASLASVSFLKPLTDKPDNKDLKMFGPRMTGGLFGKGVGVGIRK 245
           Y T+D    DL AGR+D  +A    L    +K      K+ G             + +RK
Sbjct: 158 YPTMDEANADLAAGRLDGVIADKFPLHEWMNKNGGDCCKILGDVAD---TKADAAIAVRK 214

Query: 246 EDADLKALFDKAIDAAIADGTVQKLSQQWFGYD 278
           +D  L+   + A+   +A+GT QK++ ++F +D
Sbjct: 215 DDEALRQRLNTALQQIVANGTYQKIASKYFAFD 247