Pairwise Alignments

Query, 236 a.a., ABC transporter, membrane spanning protein (nopaline) from Agrobacterium fabrum C58

Subject, 239 a.a., L-lysine and D-lysine ABC transporter, permease component 1 (from data) from Pseudomonas putida KT2440

 Score =  144 bits (362), Expect = 2e-39
 Identities = 81/229 (35%), Positives = 127/229 (55%), Gaps = 1/229 (0%)

Query: 3   LTLLQWGDAGWGDELARGAMMTVVVAACSYFFGIIFGSLFAAAKLSRFWSLRLLGDVYTT 62
           L+LL +   GWG  L  GA++TV +A      G+  G + A A  SR    R     ++T
Sbjct: 5   LSLLSFASGGWGQALLAGALVTVSLALACLPIGLPLGLVVALAARSRKRLPRAWATTFST 64

Query: 63  VVRGVPELLIIFLVFFGGGTLLRTIANGLFGYEGYIEPPIFVIGVLCISVSAGAYATEVI 122
           V RG+PELL + ++++G     + I   + GY+G      F+  ++  S+   A+++E+ 
Sbjct: 65  VFRGLPELLTLLIIYYGCQIAAQKILAAM-GYQGEFLINTFLAAMIAFSLVFAAFSSEIW 123

Query: 123 RAAVLAVPPGQIEAAKSIGMGPWLRLRRVLIPQAARFALPGLGNVWQFTLKDTSLISVVG 182
            AA   +P GQ+EA  ++G+       +VL+PQ  R ALPGL N W   LKDTSL+S + 
Sbjct: 124 LAAFKTLPKGQLEACSALGLSKRTGFFKVLLPQLTRIALPGLSNNWLSLLKDTSLVSTIS 183

Query: 183 LVEIMRTAAMGAGSTKQPFTFYITAFVIFLLLSSVSNRGFLKAEKWANR 231
           LV++MR   +    TK+P  FY  A + +LL +++S R F   E+ +NR
Sbjct: 184 LVDLMRQTNLAVSVTKEPMFFYGVACLGYLLFAALSGRVFAYIERRSNR 232