Pairwise Alignments

Query, 291 a.a., HlyD family secretion protein from Agrobacterium fabrum C58

Subject, 397 a.a., multidrug efflux transport system - membrane fusion protein from Pseudomonas putida KT2440

 Score = 90.9 bits (224), Expect = 4e-23
 Identities = 85/312 (27%), Positives = 133/312 (42%), Gaps = 65/312 (20%)

Query: 12  LLTLSMSSCAAVMGWHLWSFHIGTPW---TRDAHVRADIVRLAPDISGPVTEVLVSDNAL 68
           LL L +    A +G   W   +G  W   T DA+V  ++V + P ++G VT +   D  L
Sbjct: 24  LLGLLLLLILAGVGTWAWYSIVGR-WHESTDDAYVNGNVVEITPLVAGTVTSIGADDGDL 82

Query: 69  VEKDAPLFRIEKDRFELALREAEA-------QVTGAKAGTDAAKV--------------D 107
           V     L + +    E+AL+ AEA       QV G  +  D+ K               D
Sbjct: 83  VHAGQVLLQFDPADSEVALQSAEAKLARSVRQVRGLYSNVDSLKAQLETRQAELRKAQQD 142

Query: 108 FERYQRLASKEAASVRERQHAETQMYQAEAAYQSA-----------------------LV 144
           F R + LA   A +  E  HA   +  A+AA  SA                         
Sbjct: 143 FNRRKVLADSGAIAAEELSHARDDLSVAQAAVNSARQQLSTSSALVDDTVVSSHPDVMAA 202

Query: 145 ARDLAKLNLE--RTTVRAPASGAITNFSLRKGNYVLAGNAVGVLVEKESVYVAGYFEETK 202
           A DL +  L+  RTT+ AP +G +   +++ G  +  G A   ++  + V++   F+ET+
Sbjct: 203 AADLRQAYLDHARTTLVAPVTGYVAKRTVQLGQRLQPGTATMAVIPLDQVWIDANFKETQ 262

Query: 203 LPRIHIGDRVKI--DIMGEPESAIGHVAGVAAGIEDRERSDTAGSLASVAP----TFSWV 256
           L  + IG  V+I  D+ G      G V  + AG          GS  ++ P    T +W+
Sbjct: 263 LREMRIGQPVEITADVYGSEVKYSGTVDSLGAG---------TGSAFALLPAQNATGNWI 313

Query: 257 RLAQRIPVRIEI 268
           ++ QR+PVRI +
Sbjct: 314 KIVQRVPVRIHL 325