Pairwise Alignments

Query, 291 a.a., HlyD family secretion protein from Agrobacterium fabrum C58

Subject, 291 a.a., putative efflux pump from Pseudomonas putida KT2440

 Score =  239 bits (609), Expect = 7e-68
 Identities = 130/287 (45%), Positives = 187/287 (65%), Gaps = 2/287 (0%)

Query: 1   MKNLVFISGRVLLTLSMSSCAAVMGWHLWSFHIGTPWTRDAHVRADIVRLAPDISGPVTE 60
           MK  +   GRV+LTL + + AAV+ W +  +++  PWTRD H+RAD++++APD+SG + +
Sbjct: 1   MKKPLLTLGRVVLTLLVVTFAAVLVWQMVVYYMFAPWTRDGHIRADVIQIAPDVSGLIQK 60

Query: 61  VLVSDNALVEKDAPLFRIEKDRFELALREAEAQVTGAKAGTDAAKVDFERYQRLASKEAA 120
           V V DN  V++   LF I++DRF LALR+A+A +   +     A  + +R ++L +  AA
Sbjct: 61  VEVRDNQTVKRGDVLFTIDQDRFTLALRQAKATLGERQETLAQASREAQRNRKLGNLVAA 120

Query: 121 SVRERQHAETQMYQAEAAYQSALVARDLAKLNLERTTVRAPASGAITNFSLRKGNYVLAG 180
              + + ++++  +A +A   A VA D A+LNL+R+ VR+P  G + + + R   +V AG
Sbjct: 121 E--QLEESQSREARARSAVSEAQVAVDTAQLNLDRSVVRSPVDGYLNDRAPRNHEFVTAG 178

Query: 181 NAVGVLVEKESVYVAGYFEETKLPRIHIGDRVKIDIMGEPESAIGHVAGVAAGIEDRERS 240
             V  +V+  S +V GYFEETKL  IHIGD V I +MG+     GHV   AAGIEDR+RS
Sbjct: 179 RPVLSVVDSASYHVDGYFEETKLGGIHIGDAVDIRVMGDNTRLRGHVQSFAAGIEDRDRS 238

Query: 241 DTAGSLASVAPTFSWVRLAQRIPVRIEIDHVPNNVRLIAGRTATIAI 287
             A  L +V P FSWVRLAQRIPVRI  D VP + R+IAGRTAT++I
Sbjct: 239 SGANLLPNVNPAFSWVRLAQRIPVRIAFDEVPQDFRMIAGRTATVSI 285