Pairwise Alignments

Query, 364 a.a., ABC transporter membrane spanning protein (branched chain amino acid) from Agrobacterium fabrum C58

Subject, 425 a.a., branched-chain amino acid ABC transporter permease from Pseudomonas simiae WCS417

 Score =  125 bits (313), Expect = 3e-33
 Identities = 93/333 (27%), Positives = 154/333 (46%), Gaps = 41/333 (12%)

Query: 21  VVVLAIAYLVVPFVGTSYLFEAILLPFLALSLAGVGLNLLTGYAGQVSLGSAAFMAVGAF 80
           +  L +  +V P     YL   ++L  + + L G+GLN++ G AG + LG  AF A+GA+
Sbjct: 99  IPALIVIAIVFPIFANKYLLTVVILGLIYV-LLGLGLNIVVGLAGLLDLGYVAFYAIGAY 157

Query: 81  AAYNFDLRVDGLPLTVSIVLAGLSAAIIGIVFGLPSLRLRGFYLAVSTLAAQFFVQWALT 140
                  +  GL     + LA ++AA+ G + G P LR+ G YLA+ TL     ++  L 
Sbjct: 158 GLA-LGYQYLGLGFWTVLPLAAIAAALAGCILGFPVLRMHGDYLAIVTLGFGEIIRLVLN 216

Query: 141 KFSWLSNESASGVIDAPALSLAGISFE------------------GPVGRYLFA----LT 178
             +WLS       +  P+ +  G+ F                    P  ++LF       
Sbjct: 217 --NWLSFTGGPNGMPVPSPTFLGLEFGKRAKDGGIPFHEFFGIDYNPNIKFLFIYIVLFL 274

Query: 179 TVTALTFLAYRLVSSQTGRNFIAVRDNETAARIIGVPVLRTKLLAFAISSFIIGVAGVIW 238
            V A+ ++ +RL     GR + A+R++E A R +G+  +  KL AF I +   G+AGV +
Sbjct: 275 VVLAVLYIKHRLTRMPVGRAWEALREDEIACRSMGLNHVLVKLSAFTIGASTAGLAGVFF 334

Query: 239 AFAYLRTVEPAGFNLDRSFQILFIVIIGGLASIRGAFFGAALIVVFPLVLSRLGSLLLGD 298
           A +Y   V P+ F    S  IL IV++GG+ S  G    A ++ V P +L       +  
Sbjct: 335 A-SYQGFVNPSSFTFFESALILAIVVLGGMGSTVGVVIAAFVLTVAPELLRSFSEYRV-- 391

Query: 299 VFDSGVLDMTQRIVIGALIILFLILEPDGLVSL 331
                       ++ G L+++ +I  P GL+ +
Sbjct: 392 ------------LLFGVLMVVMMIWRPRGLIRI 412