Pairwise Alignments

Query, 502 a.a., hypothetical protein from Agrobacterium fabrum C58

Subject, 464 a.a., DNA repair protein RadA from Variovorax sp. SCN45

 Score = 60.1 bits (144), Expect = 2e-13
 Identities = 56/205 (27%), Positives = 87/205 (42%), Gaps = 28/205 (13%)

Query: 253 SGISEFDDLLGGGVARGSSTLLIGPAGTGKSLFALQFVEAAVSRGERAAIFVFDEELGLL 312
           +G+ E D +LGGG+  G  TL+ G  G GKS   LQ V+A    G+ A     +E    +
Sbjct: 79  TGLDELDRVLGGGIVSGGVTLIGGDPGIGKSTLLLQAVDALQRAGQNALYVTGEESGSQV 138

Query: 313 FDRTKEMGLDLEAMRDKNLLHIEQLDAAELSPGEFSQRVRDKVASFDA---KTVVIDSIN 369
             R+K +GLD   ++    + +E++                 +A+ DA      VIDSI 
Sbjct: 139 ALRSKRLGLDHSQVQVLAEIQLEKI-----------------IATLDATRPAIAVIDSIQ 181

Query: 370 G-YQAAMPEENALILHMHELLQYLNRQGANTFITVAQHGLV---GDMKSPVDVTYLADTV 425
             Y   +      +  + E   +L R    +   V   G V   G +  P  + ++ DTV
Sbjct: 182 TVYSDQLTSAPGSVAQVRECAAHLTRFAKTSGTAVVLVGHVTKEGALAGPRVLEHMVDTV 241

Query: 426 ILLRYFEAEARVR-RAISVIKKRTG 449
           +   YFE +     R +  IK R G
Sbjct: 242 L---YFEGDTHSSFRLVRAIKNRFG 263



 Score = 52.0 bits (123), Expect = 5e-11
 Identities = 61/216 (28%), Positives = 96/216 (44%), Gaps = 36/216 (16%)

Query: 6   VAKAKTGVEGLDDILSGGLSRRHVFLLEGAPGSGKTTIALQFLLEGATIGERCLYITLSE 65
           VA+  TG++ LD +L GG+    V L+ G PG GK+T+ LQ +      G+  LY+T   
Sbjct: 74  VARTPTGLDELDRVLGGGIVSGGVTLIGGDPGIGKSTLLLQAVDALQRAGQNALYVT--- 130

Query: 66  TEEELRDSASSHGKDIGDQVEIFELVPPESLLDADQQQSLLYSSDLELGETTKLIFEAFE 125
                       G++ G QV    L      LD  Q Q L   ++++L    + I    +
Sbjct: 131 ------------GEESGSQV---ALRSKRLGLDHSQVQVL---AEIQL----EKIIATLD 168

Query: 126 RVKPHRVVIDSL----SEIRLLAQSSLRYRRQILA-LKHFFSRSDATVLLLDDMTSD--- 177
             +P   VIDS+    S+    A  S+   R+  A L  F   S   V+L+  +T +   
Sbjct: 169 ATRPAIAVIDSIQTVYSDQLTSAPGSVAQVRECAAHLTRFAKTSGTAVVLVGHVTKEGAL 228

Query: 178 AMDKTVHSVVHGVIHLEQLAPDYGSERRRLRVLKYR 213
           A  + +  +V  V++ E    D  S  R +R +K R
Sbjct: 229 AGPRVLEHMVDTVLYFE---GDTHSSFRLVRAIKNR 261