Pairwise Alignments

Query, 502 a.a., hypothetical protein from Agrobacterium fabrum C58

Subject, 480 a.a., hypothetical protein from Agrobacterium fabrum C58

 Score =  360 bits (923), Expect = e-104
 Identities = 200/463 (43%), Positives = 283/463 (61%), Gaps = 6/463 (1%)

Query: 9   AKTGVEGLDDILSGGLSRRHVFLLEGAPGSGKTTIALQFLLEGATIGERCLYITLSETEE 68
           A TG+ GLD+IL GGL   ++++L+GAPGSGKTT ALQFL  G   GE C+Y+TLS+T  
Sbjct: 10  ATTGIAGLDEILRGGLPASNLYILQGAPGSGKTTAALQFLRAGVAAGESCIYVTLSQTAA 69

Query: 69  ELRDSASSHGKDIGDQVEIFELVPPESLLDADQQQSLLYSSDLELGETTKLIFEAFERVK 128
           EL+  A SHG  + D + I EL    S+ +AD Q S+  +SDL L ET K I  A E  K
Sbjct: 70  ELKAIAVSHGWTL-DGIRIEELATSGSVNEADDQ-SIFMTSDLRLDETRKAIEAAIEEHK 127

Query: 129 PHRVVIDSLSEIRLLAQSSLRYRRQILALKHFFSRSDATVLLLDDMTSD--AMDKTVHSV 186
           P R+V DSL EIRL+   S R+RR+++A K F ++ D   LLLD  +SD     + +  +
Sbjct: 128 PRRLVYDSLLEIRLITGDSPRFRRELIAFKAFLAKQDVVALLLDTQSSDFDRSGEEMEGL 187

Query: 187 VHGVIHLEQLAPDYGSERRRLRVLKYRGQAFRGGYHDFTIKTG-GVEVFPRLRALEHRVA 245
            HGVI  ++   +YG  RRR+ + K R      GYHD  I+ G GV +FPR+        
Sbjct: 188 AHGVIRFDKSLEEYGGVRRRVEISKMRSVPIADGYHDMAIREGEGVVIFPRIMPSAASDT 247

Query: 246 FERTLVASGISEFDDLLGGGVARGSSTLLIGPAGTGKSLFALQFVEAAVSRGERAAIFVF 305
            +  L+ SG++E D++ GGG   G++TL+IG AGTGKS  +  +  AA+ RGE  A+F+F
Sbjct: 248 GKPQLIKSGVAELDEMFGGGQEAGTTTLVIGQAGTGKSTMSSLYATAALERGENVALFLF 307

Query: 306 DEELGLLFDRTKEMGLDLEAMRDKNLLHIEQLDAAELSPGEFSQRVRDKVASFDAKTVVI 365
           +E L   F R++ +G+ L        L +   +  E+SPGEF Q VRD V    +K VVI
Sbjct: 308 EERLETFFRRSEGLGMQLRQFHKDGRLILRDFNPNEISPGEFGQIVRDAVTQNKSKVVVI 367

Query: 366 DSINGYQAAMPEENALILHMHELLQYLNRQGANTFITVAQHGLVG-DMKSPVDVTYLADT 424
           DS+ GY  ++P  +  +  +  LL+YL R G  T + VAQHGL+G ++   VDV++L DT
Sbjct: 368 DSLTGYLNSLPHRDKAVRDIQSLLKYLARSGVLTMLIVAQHGLLGQNVGIDVDVSFLGDT 427

Query: 425 VILLRYFEAEARVRRAISVIKKRTGRHEDTIREYKIGANGLTL 467
           V+LLR  E E R+RR I+V+KKR G H+  +RE  I +  +++
Sbjct: 428 VLLLRIMEHEGRLRRNITVVKKRHGPHDLDVRELIIESGNVSV 470



 Score = 42.7 bits (99), Expect = 3e-08
 Identities = 49/224 (21%), Positives = 90/224 (40%), Gaps = 17/224 (7%)

Query: 249 TLVASGISEFDDLLGGGVARGSSTLLIGPAGTGKSLFALQFVEAAVSRGERAAIFVFDEE 308
           ++  +GI+  D++L GG+   +  +L G  G+GK+  ALQF+ A V+ GE        + 
Sbjct: 8   SVATTGIAGLDEILRGGLPASNLYILQGAPGSGKTTAALQFLRAGVAAGESCIYVTLSQT 67

Query: 309 LGLLFDRTKEMGLDLEAMRDKNLL---HIEQLD------AAELSPGEFSQRVRDKVASFD 359
              L       G  L+ +R + L     + + D       ++L   E  + +   +    
Sbjct: 68  AAELKAIAVSHGWTLDGIRIEELATSGSVNEADDQSIFMTSDLRLDETRKAIEAAIEEHK 127

Query: 360 AKTVVIDSINGYQAAMPEENALILHMHELLQYLNRQGANTFITVAQHGLVGDMKSPVDVT 419
            + +V DS+   +    +       +     +L +Q     +   Q       +S  ++ 
Sbjct: 128 PRRLVYDSLLEIRLITGDSPRFRRELIAFKAFLAKQDVVALLLDTQSSDFD--RSGEEME 185

Query: 420 YLADTVILL-RYFEAEARVRRAISVIKKRT-----GRHEDTIRE 457
            LA  VI   +  E    VRR + + K R+     G H+  IRE
Sbjct: 186 GLAHGVIRFDKSLEEYGGVRRRVEISKMRSVPIADGYHDMAIRE 229