Pairwise Alignments

Query, 180 a.a., ECF family RNA polymerase sigma factor from Agrobacterium fabrum C58

Subject, 199 a.a., RNA polymerase ECF-type sigma factor from Sphingobium sp. HT1-2

 Score = 96.3 bits (238), Expect = 3e-25
 Identities = 61/151 (40%), Positives = 84/151 (55%), Gaps = 6/151 (3%)

Query: 31  PALTAFARRFVRNEDDVNDLVQETMLRGFRSLQGFTPGTALKSWLFTILRNTFCTRYKVS 90
           P L ++AR   RN D   DLVQET+L+ +R    F PGT LK+W F ILRN+F ++    
Sbjct: 2   PRLASYARSLARNSDTAQDLVQETLLKAWRHRASFEPGTNLKAWTFRILRNSFLSQV--- 58

Query: 91  RRECVGLPVGIEQSMSIP--ADQEWRLQHQEVMRAILELDKDQKKALLLIA-GGTSYSDA 147
           RR   G      + + IP  ++QE  +   +V R    L  +Q++ + LI   G SY + 
Sbjct: 59  RRRGAGYASETAELIDIPVASNQESVVTLSDVRRLWSRLTPEQQRCIQLIGIQGLSYEET 118

Query: 148 AAICGCRVGTIKSRVNRARESLRQKLDRVGT 178
           A I    VGTIKSRV R R+ LR+ LD+  T
Sbjct: 119 ATIEQVPVGTIKSRVLRGRQLLRELLDQTNT 149