Pairwise Alignments

Query, 180 a.a., ECF family RNA polymerase sigma factor from Agrobacterium fabrum C58

Subject, 249 a.a., RNA polymerase ECF-type sigma factor from Sphingobium sp. HT1-2

 Score =  110 bits (276), Expect = 1e-29
 Identities = 65/172 (37%), Positives = 101/172 (58%), Gaps = 6/172 (3%)

Query: 14  LTEAQLEVLRSG-----IADLAPALTAFARRFVRNEDDVNDLVQETMLRGFRSLQGFTPG 68
           L +A  E L  G     +A + P L AF R    N D  +DLVQET+L+ + +   F  G
Sbjct: 25  LNQAPREALSDGEFKRELAAVIPHLRAFGRSLSGNRDTADDLVQETLLKAWAARARFQAG 84

Query: 69  TALKSWLFTILRNTFCTRYKVSRRECVGLPVGIEQSMSIPADQEWRLQHQEVMRAILELD 128
           T +++W F ILRN + ++ + SR       +  ++ ++ PA Q+  ++  ++ RA+L+L 
Sbjct: 85  TNMRAWTFIILRNHYLSQMRRSRFRGDWDDLTADRLLAAPAGQDKHVELSDMQRALLQLP 144

Query: 129 KDQKKALLLI-AGGTSYSDAAAICGCRVGTIKSRVNRARESLRQKLDRVGTP 179
           + Q++AL+L+ AGG +Y +AA ICG  VGTIKSRV R R +L Q L+    P
Sbjct: 145 QPQREALILVGAGGFAYEEAAEICGVAVGTIKSRVARGRAALEQILEEGALP 196