Pairwise Alignments

Query, 180 a.a., ECF family RNA polymerase sigma factor from Agrobacterium fabrum C58

Subject, 173 a.a., putative ECF sigma factor PrtI from Pseudomonas putida KT2440

 Score = 58.9 bits (141), Expect = 5e-14
 Identities = 47/148 (31%), Positives = 68/148 (45%), Gaps = 4/148 (2%)

Query: 28  DLAPALTAFARRFVRNEDDVNDLVQETMLRGFRSLQGFTPGTALKSWLFTILRNTFCTRY 87
           +L   L  FA    R     +DLVQ T+ R            AL++WLFTIL   F    
Sbjct: 11  ELLARLRRFAVWLTREPGSADDLVQATVERALSRRDQQRDADALRAWLFTILYRQFLDGK 70

Query: 88  KVSRRECVGLP-VGIEQSMSIPADQ--EWRLQHQEVMRAILELDKDQKKALLLIA-GGTS 143
           +  R     L   G  +    P     E  +  Q  ++A   L  +Q+  LLL++  G S
Sbjct: 71  RRERLHARWLSWFGRNEHDDEPVGDNLETIVLAQADLQAFARLTAEQRALLLLVSIEGLS 130

Query: 144 YSDAAAICGCRVGTIKSRVNRARESLRQ 171
           Y +AA   G  +GT+ SR++RAR +LR+
Sbjct: 131 YKEAAQALGIPIGTVMSRLSRARNALRE 158