Pairwise Alignments

Query, 242 a.a., ABC transporter membrane spanning protein from Agrobacterium fabrum C58

Subject, 222 a.a., ABC transporter, permease protein (cluster 3, basic aa/glutamine/opines) from Variovorax sp. SCN45

 Score =  131 bits (329), Expect = 1e-35
 Identities = 77/225 (34%), Positives = 126/225 (56%), Gaps = 13/225 (5%)

Query: 3   LDLVFDYVFS--PAFFHGALLTLVITVTSLFFGMIAGLIVALLQESRIRPLQIFTL---- 56
           +DL F  V+   P    GAL+T+ IT  +L  G + GL+V +    R+ P + +      
Sbjct: 1   MDLDFSPVWQGWPDLLRGALVTVEITACALALGCVLGLLVGI---GRLNPKRRWIYGACT 57

Query: 57  VYLWLFRGTPVLFQIIFIYNVLPTFGVMLSAFVSAVIALSLNEGAYMAEIIRSGLQAVKK 116
            Y+   RGTP+L Q+  ++  LP FG++L AF+  V+ L +  GAY++EI+R  +Q++ K
Sbjct: 58  AYVAAIRGTPLLVQLFILFFGLPHFGILLPAFLCGVLGLGVYSGAYVSEIVRGAIQSIDK 117

Query: 117 GQRTAGLALGMTRFAVMCYIVIPQAARIVLPPTGNQMIGMLKTSALVSVVAVEELLLVAN 176
           GQ  A  +LGMT    M  IV+PQA   ++PP GN+ I ++K SALVS++ + +++    
Sbjct: 118 GQTMAAQSLGMTPGVAMRQIVLPQAVVRMIPPLGNEFIALIKNSALVSLLTIHDVMHEGQ 177

Query: 177 QTASSNFKYFEALTAAGIYYLALTSIFMGFQYLLERALDRKRPRG 221
           +  S +++  E   A  + Y  LT    G   L+ R  ++K  +G
Sbjct: 178 KIISVSYRSLEVYLAIAVVYFVLT----GTMTLILRHFEQKLRQG 218