Pairwise Alignments

Query, 1052 a.a., AcrB/AcrD/AcrF family protein from Agrobacterium fabrum C58

Subject, 1032 a.a., multidrug efflux transport system - membrane subunit from Pseudomonas putida KT2440

 Score =  329 bits (844), Expect = 6e-94
 Identities = 269/1039 (25%), Positives = 470/1039 (45%), Gaps = 56/1039 (5%)

Query: 17   NLSRWAISHPSIARFLFGLIIVMGALGVINMGQKEDPDFTFRVMVVQSVWPGASIDDMQN 76
            NLSR  I  P         I++ G +    +     P   +  + V +++PGAS   M +
Sbjct: 2    NLSRLFILRPVATTLSMLAIVLAGLIAYKLLPVSALPQVDYPTIRVMTLYPGASPQVMTS 61

Query: 77   QVVNKIERKLQETPHLDWVKSYIRAGVAITTIQIKGDTNGADVADAFYQVRKKVGDIKQD 136
             V   +ER+  + P L+ + S    G ++ T++   D N  DVA+   QV+  +      
Sbjct: 62   AVTAPLERQFGQMPGLEQMASTSSGGASVLTLRFNLDMN-MDVAEQ--QVQAAINAASNL 118

Query: 137  LPSGLLGP--YFNDEFGDTYITLHAISGDGYSYPELKKFA-IQARDMLIAMPGVEKAVIL 193
            LPS L  P  Y      DT +   AIS      P+L      +    L  + GV    I 
Sbjct: 119  LPSDLPAPPVYNKVNPADTPVLTLAISSKTMPLPKLNDLVDTRVAQKLAQISGVGMVSIA 178

Query: 194  GDQPQKIFIDVSSKALAERGLTVVDIQNALQGQNDVDPAGSVETADRSVRISVEGDVTTP 253
            G Q Q + I V+  ALA  GL + D++  +   N   P G+ +   R   +     + +P
Sbjct: 179  GGQRQAVRIKVNVDALAANGLNLDDVRTLIGASNVNQPKGNFDGPTRVSMLDANDQLRSP 238

Query: 254  AEIRELRLKAGDQV-IRLGDIATVRDGLEDPFQRKFRVNGHDTVELGVVMAKGFKVTDVG 312
             E   L L   +   +RL D+A + DG E+     +    H  V L +    G  V +V 
Sbjct: 239  EEYANLILAYNNGAPLRLKDVAEIVDGAENERLAAWANENH-AVLLNIQRQPGANVIEVV 297

Query: 313  KGIEETYKRFEDTLPVGVEVTQISNQPEVVTEAVGEFTQALMEALGIVLIVSLISIGWRS 372
              I+       D LP G++V+ ++++ + +  AV +    L+ A+ +V++V+ + +   S
Sbjct: 298  DRIKGLLPSITDNLPAGLDVSVLTDRTQTIRAAVKDVQHELLIAIVLVVMVTFVFLRRFS 357

Query: 373  GIVI-AVAIPLVLAATLAIMFYMGIELQRISLGALIIALGLLVDDAMIVVEMMERKLEEG 431
              +I ++A+PL L  T  +M+  G  +  ++L AL IA G +VDDA++++E + R +EEG
Sbjct: 358  ATLIPSIAVPLSLIGTFGVMYLAGFSVNNLTLMALTIATGFVVDDAIVMLENISRHIEEG 417

Query: 432  LNRLDAASFAYSSTAFPMLTGTLITTAGFIPVGFAASTAGEYVRSLFFVVGIALVTSWFV 491
               + AA        F +++ T    A  IP+ F A   G   R     + +A++ S  V
Sbjct: 418  ETPMQAALKGARQIGFTLISLTFSLIAVLIPLLFMADVVGRLFREFAITLAVAILISLVV 477

Query: 492  AVYFTPWLGYMILKQRAHAGTHHDAYDTRFYRG-----------VGHTVGWAVRHKAIVL 540
            ++  TP +   +LK+        +    RFYR             G  + W ++H+ + L
Sbjct: 478  SLTLTPMMCARLLKREP-----KEEEQGRFYRASGAWIDWLIQHYGSALQWVLKHQPLTL 532

Query: 541  LLTLGAFVGSLWSFQFIPQSFFPQSSRPEILVDMWLPEGTAIKEVERQAKALEAKIMDDP 600
            L+ + + V +++ +  +P+ FFP      I      P+ T+   +  + +AL   I+ DP
Sbjct: 533  LVAVASLVLTVFLYMVVPKGFFPVQDTGVIQGISEAPQSTSFAAMSERQQALSKVILQDP 592

Query: 601  DKKFVATFIGEGAPRFFLPLDQQLRNPNYAQLLVMSNGLEERERMIVKLRKILAEDFPTV 660
              + ++++IG         +D      N  +LL+      ER+   V   ++++   P V
Sbjct: 593  AVQSLSSYIG---------VDGDNATLNSGRLLINLKPHGERD---VSASEVISRLQPQV 640

Query: 661  RGKVD-RLFLGPPVGWAVQMRV---------VGPDRAEVRSIADQVKQRFEQQPNFGAVH 710
               V  RLF+ P    +++ RV           PD   +   + ++ Q  +Q+P    V 
Sbjct: 641  DRLVGIRLFMQPVQDLSIEDRVSRTQYQFSLSSPDADLLAQWSGKLVQALQQRPELADVA 700

Query: 711  DDWMEPVPAMKLVIDQDRARALGVSSQRVRQILQAATNGAAISDFRDGEETVSIVVREPD 770
             D  +    + LVID+D A  LG+S  ++   L  A     IS          +V++  D
Sbjct: 701  SDLQDKGLQVYLVIDRDMASRLGISVSQITNALYDAFGQRQISTIYTQASQYRVVLQSSD 760

Query: 771  ATRSLLSAVNSVYIPTDIGGFVPASQIARVVPLLEQGIEWRRDRLPTITVKATLPDGVEP 830
            A      A+ S+++    GG V  S +AR+     Q       + P +T+   L  G   
Sbjct: 761  AATIGPQALESIHVKATDGGQVRLSALARIEQRQAQLAISHIGQFPAVTLSFNLAHGASL 820

Query: 831  TQVTMNLYNSMADLRAKLPAGYKVEIQGGAEDAAESQQSIAAKAPIMLLVILVLLMIQLQ 890
             +    +     D+   +P G +   QG AE    S  S        ++ + ++L +  +
Sbjct: 821  GEAVQVIEQVQKDI--GMPLGVQTRFQGAAEAFQASLSSTLLLILAAVVTMYIVLGVLYE 878

Query: 891  HFGKAMLVLATGPLGIIGAAMALLITGAPFGFVAILGVIALLGIIMRNSIILVD-QIDQD 949
             +   + +L+T P   +GA +ALLI+G   G +AI+G+I L+GI+ +N+I+++D  ++ +
Sbjct: 879  SYIHPITILSTLPSAAVGALLALLISGNDLGMIAIIGIILLIGIVKKNAIMMIDFALEAE 938

Query: 950  IAAGHPRAEAIVGAAVRRFRPIMLTALTAVLALIPISRGLFWG-----PMAYAMMGGILV 1004
               G    +AI  AA+ RFRPI++T L A+   +P+      G     P+   M+GG+LV
Sbjct: 939  RNQGMSPRDAIYQAALLRFRPILMTTLAALFGAVPLMLATGSGAELRQPLGLVMVGGLLV 998

Query: 1005 ATVLTILVLPAAYALFFGR 1023
            + VLT+   P  Y L+F R
Sbjct: 999  SQVLTLFTTPVIY-LYFDR 1016