Pairwise Alignments

Query, 1052 a.a., AcrB/AcrD/AcrF family protein from Agrobacterium fabrum C58

Subject, 1030 a.a., RND efflux transporter from Pseudomonas putida KT2440

 Score =  741 bits (1913), Expect = 0.0
 Identities = 387/1016 (38%), Positives = 618/1016 (60%), Gaps = 2/1016 (0%)

Query: 15   KFNLSRWAISHPSIARFLFGLIIVMGALGVINMGQKEDPDFTFRVMVVQSVWPGASIDDM 74
            +FNLS  A+   SI  FL  LI   G L    +G+ EDP FT + M + + WPGA+  +M
Sbjct: 5    RFNLSALAVRERSITLFLIVLIAFAGTLAFFKLGRAEDPPFTVKQMTIITAWPGATAQEM 64

Query: 75   QNQVVNKIERKLQETPHLDWVKSYIRAGVAITTIQIKGDTNGADVADAFYQVRKKVGDIK 134
            Q+ V   +E+++QE    D  ++Y R G+A T + ++  T  + V + FYQ RKK GD  
Sbjct: 65   QDLVAEPLEKRMQELRWYDRTETYTRPGLAFTMVSLQDKTPPSAVQEEFYQARKKAGDQA 124

Query: 135  QDLPSGLLGPYFNDEFGDTYITLHAISGDGYSYPELKKFAIQARDMLIAMPGVEKAVILG 194
            + +P+G++GP  NDEF D    ++A+   G    +L + A   R  L+ +PGV+K  I+G
Sbjct: 125  KLMPAGVIGPMLNDEFSDVTFAVYALKAKGEPQRQLVRDAETLRQQLLHVPGVKKVNIIG 184

Query: 195  DQPQKIFIDVSSKALAERGLTVVDIQNALQGQNDVDPAGSVETADRSVRISVEGDVTTPA 254
            +Q ++IF+  S   LA  G+T  DI +AL  QN + P+GSVET    V + V+G     A
Sbjct: 185  EQAERIFVSFSHDRLATLGITPQDIFSALDNQNALSPSGSVETQGPQVVVRVDGAFDQLA 244

Query: 255  EIRELRLKAGDQVIRLGDIATVRDGLEDPFQRKFRVNGHDTVELGVVMAKGFKVTDVGKG 314
            +IRE  + A  + ++L D+A V  G EDP     R +G   + LG+VM +G+   D+GK 
Sbjct: 245  KIRETPVVAQGRPLKLSDVADVERGYEDPATFLVRNDGEPALLLGIVMREGWNGLDLGKA 304

Query: 315  IEETYKRFEDTLPVGVEVTQISNQPEVVTEAVGEFTQALMEALGIVLIVSLISIGWRSGI 374
            +E    +  + +P+G+ ++++++Q   +T +V EF      AL +V++V  +S+GWR G+
Sbjct: 305  LEAETAKINEGMPLGMTLSKVTDQAVNITSSVDEFMIKFFVALLVVMLVCFLSMGWRVGV 364

Query: 375  VIAVAIPLVLAATLAIMFYMGIELQRISLGALIIALGLLVDDAMIVVEMMERKLEEGLNR 434
            V+A A+PL LA    +M   G    RI+LG+LI+ALGLLVDDA+I +EMM  K+EEG +R
Sbjct: 365  VVAAAVPLTLAIVFVVMAATGKNFDRITLGSLILALGLLVDDAIIAIEMMVVKMEEGYDR 424

Query: 435  LDAASFAYSSTAFPMLTGTLITTAGFIPVGFAASTAGEYVRSLFFVVGIALVTSWFVAVY 494
            + A+++A+S TA PML+GTL+T  GF+P GFA STAGEY  ++F++VGIAL+ SW VAV 
Sbjct: 425  IKASAYAWSHTAAPMLSGTLVTAIGFMPNGFAQSTAGEYTSNMFWIVGIALIASWVVAVA 484

Query: 495  FTPWLGYMILKQ-RAHAGTHHDAYDTRFYRGVGHTVGWAVRHKAIVLLLTLGAFVGSLWS 553
            FTP+LG  +L + +   G H   Y+TR Y      +GW + HK +V    +  FV ++  
Sbjct: 485  FTPYLGVKLLPRIKTIEGGHAAIYNTRHYNRFRALLGWVIAHKWLVAGTVVSTFVAAVLG 544

Query: 554  FQFIPQSFFPQSSRPEILVDMWLPEGTAIKEVERQAKALEAKIMDDPDKKFVATFIGEGA 613
               + + FFP S RPE+LV++ +P GT+I++    A  +E+ +    + K V T+IG+G 
Sbjct: 545  MGLVKKQFFPTSDRPEVLVELQMPYGTSIEQTNATAIKVESWLRQQEEAKIVTTYIGQGP 604

Query: 614  PRFFLPLDQQLRNPNYAQLLVMSNGLEERERMIVKLRKILAEDF-PTVRGKVDRLFLGPP 672
            PRFFL +  +L +P++A+++V++     RE +  +LR+  +E   P  + +V +L  GP 
Sbjct: 605  PRFFLAMAPELPDPSFAKIVVLTENQGAREALKHRLREAASEGLAPGAQVRVTQLVFGPY 664

Query: 673  VGWAVQMRVVGPDRAEVRSIADQVKQRFEQQPNFGAVHDDWMEPVPAMKLVIDQDRARAL 732
              + V  RV+GPD +++R IA +V+   +  P    V+ DW   VP +   ++QDR +++
Sbjct: 665  SPYPVAYRVMGPDASQLRQIAARVQSVLQASPMMKTVNTDWGPLVPTLHFSLNQDRLQSV 724

Query: 733  GVSSQRVRQILQAATNGAAISDFRDGEETVSIVVREPDATRSLLSAVNSVYIPTDIGGFV 792
            G++S  V Q LQ    G  I+  R+   +V +V R     R   + + +  +    G  V
Sbjct: 725  GLTSASVSQQLQFLLTGVPITSVREDIRSVQVVGRAAGQIRLDPAQIENFTLVGSNGQRV 784

Query: 793  PASQIARVVPLLEQGIEWRRDRLPTITVKATLPDGVEPTQVTMNLYNSMADLRAKLPAGY 852
            P SQI  V   +E  I  RRDR PT+TV+  + +G++P  V+  ++  +  +  +LPAGY
Sbjct: 785  PVSQIGDVSIRMEDPILRRRDRTPTMTVRGDIAEGLQPPDVSTAIWKDLQPIVTQLPAGY 844

Query: 853  KVEIQGGAEDAAESQQSIAAKAPIMLLVILVLLMIQLQHFGKAMLVLATGPLGIIGAAMA 912
            K+E+ G  E++A++ Q+I    PIM+ + L+++++Q++     ++V  T PLG+IG    
Sbjct: 845  KIEMAGSIEESAKASQAIVPLLPIMIALTLLIIILQVRSISAMVMVFLTSPLGLIGVVPV 904

Query: 913  LLITGAPFGFVAILGVIALLGIIMRNSIILVDQIDQDIAAGHPRAEAIVGAAVRRFRPIM 972
            LL+ G PFG  A++G+IAL GI+MRN++IL+ QID +   G    +A+V A V+R RP++
Sbjct: 905  LLLFGQPFGINALVGLIALSGILMRNTLILIGQIDHNQLEGLAPFDAVVEATVQRARPVL 964

Query: 973  LTALTAVLALIPISRGLFWGPMAYAMMGGILVATVLTILVLPAAYALFFGREPKAK 1028
            LTAL A+LA IP++  +FWG +AY ++GG  V T++T++ LPA Y+++F   P ++
Sbjct: 965  LTALAAILAFIPLTHSVFWGTLAYTLIGGTFVGTIMTLVFLPAMYSIWFKIRPNSR 1020