Pairwise Alignments

Query, 535 a.a., ABC transporter nucleotide binding/ATPase (oligopeptide) from Agrobacterium fabrum C58

Subject, 523 a.a., microcin ABC transporter ATP-binding protein from Pseudomonas simiae WCS417

 Score =  291 bits (745), Expect = 4e-83
 Identities = 174/524 (33%), Positives = 287/524 (54%), Gaps = 18/524 (3%)

Query: 2   LLKIDNLKVEAKGEEGWSPILHGINLEVRRGEVVGLIGESGAGKSTLGLAALGFAHAGLR 61
           L++I +L V   G+     ++  ++L+VR GE + L+GESG+GKS    + L        
Sbjct: 3   LIEIRDLSVAFSGQT----VVRNLSLDVRPGECLALVGESGSGKSVTAHSILQLLPEAGT 58

Query: 62  FAGGRVLVENVDLLRLTERERSAYRGRRVAYVAQSAAASFNPAWQLLDQFCEGPAIHGTA 121
              G +     +L+  +       RG R+A + Q    S NP   +  Q  E   +H   
Sbjct: 59  ETTGSIQYRGQELIGASAATLQKLRGNRIAMIFQEPMTSLNPLHSIEKQIGETLLLHKGL 118

Query: 122 SRPDCEILARQLYASMQLPDAANFGLRFPHQVSGGQLQRAMVAMAMACKPDLIVFDEPTT 181
                +    +L   + +         +PHQ+SGGQ QR M+AMA+AC+P+L++ DEPTT
Sbjct: 119 GGKAAQARILELLDLVGIQKPQERLKAYPHQLSGGQRQRVMIAMALACEPELLIADEPTT 178

Query: 182 ALDVTTQIGVLTAIRSAVETSETAAIYITHDLAVVAQMADRIKVMRHGREVEEAPTRQIM 241
           ALDVT Q  +L  ++S  +    + + I+HDL +V  +A R+ VMR G  VE+A  + + 
Sbjct: 179 ALDVTVQRKILLLLKSLQKRLGMSLLLISHDLNLVRSIAQRVCVMRAGEIVEQADCQTLF 238

Query: 242 QSPREDYTRSLWAVREFHRPERRLERNDAPVISINNVTASYG----------HFDVLRDV 291
            +P+  Y+R L             ER    V+ ++++T  +           +   +  +
Sbjct: 239 NAPQHPYSRLLLDAEPDADALCSDERET--VLQVDDLTVQFRLGGGLFRRKTYLRAVDGI 296

Query: 292 AFEIPRGATVAVVGESGSGKSTAARVVTGLLPPRIGSITLNGEVLPPSFSRRSREQLRKI 351
           +  + RG T+ +VGESGSGKST  + +  LL    GSI   GE L P  +++ R   +++
Sbjct: 297 SLSVQRGKTLGIVGESGSGKSTLGQAILRLLDST-GSIRFQGEALDPLNNQQMRPWRKQM 355

Query: 352 QMIYQMADTALNPRQSIRQILCRPLQFYVGLKGAALERRLGELMEQIELSPRQFLHRVPG 411
           Q+++Q    +L+PR ++ QI+   L+ +     A  + ++ ++++ + L P    HR P 
Sbjct: 356 QVVFQDPYGSLSPRMTVEQIISEGLEVHAPCSLADRDAQVIQVLKDVGLDPAS-RHRYPH 414

Query: 412 ELSGGQKQRIGIARALAANPEIIICDEVTSALDQLVAEGILRLLSRLQDETGISYMFITH 471
           E SGGQ+QRI IARAL   P +++ DE TSALD+ V + ++ LL  LQD+ G++Y+FI+H
Sbjct: 415 EFSGGQRQRIAIARALVLKPALMLLDEPTSALDRTVQKQVVALLRELQDKYGLTYLFISH 474

Query: 472 DIDTVRAIADDVVVMKSGTVQDKGSKAEVMDPPRHHYTRQLLAS 515
           D+  VRA+A D++V+K G V ++G+   V D P+H YT++LLA+
Sbjct: 475 DLAVVRAMAHDMIVIKDGQVVERGASHAVFDAPQHPYTKELLAA 518



 Score =  157 bits (398), Expect = 7e-43
 Identities = 95/255 (37%), Positives = 151/255 (59%), Gaps = 6/255 (2%)

Query: 272 VISINNVTASYGHFDVLRDVAFEIPRGATVAVVGESGSGKSTAARVVTGLLPPR----IG 327
           +I I +++ ++    V+R+++ ++  G  +A+VGESGSGKS  A  +  LLP       G
Sbjct: 3   LIEIRDLSVAFSGQTVVRNLSLDVRPGECLALVGESGSGKSVTAHSILQLLPEAGTETTG 62

Query: 328 SITLNG-EVLPPSFSRRSREQLRKIQMIYQMADTALNPRQSIRQILCRPLQFYVGLKGAA 386
           SI   G E++  S +   + +  +I MI+Q   T+LNP  SI + +   L  + GL G A
Sbjct: 63  SIQYRGQELIGASAATLQKLRGNRIAMIFQEPMTSLNPLHSIEKQIGETLLLHKGLGGKA 122

Query: 387 LERRLGELMEQIELS-PRQFLHRVPGELSGGQKQRIGIARALAANPEIIICDEVTSALDQ 445
            + R+ EL++ + +  P++ L   P +LSGGQ+QR+ IA ALA  PE++I DE T+ALD 
Sbjct: 123 AQARILELLDLVGIQKPQERLKAYPHQLSGGQRQRVMIAMALACEPELLIADEPTTALDV 182

Query: 446 LVAEGILRLLSRLQDETGISYMFITHDIDTVRAIADDVVVMKSGTVQDKGSKAEVMDPPR 505
            V   IL LL  LQ   G+S + I+HD++ VR+IA  V VM++G + ++     + + P+
Sbjct: 183 TVQRKILLLLKSLQKRLGMSLLLISHDLNLVRSIAQRVCVMRAGEIVEQADCQTLFNAPQ 242

Query: 506 HHYTRQLLASVPQMD 520
           H Y+R LL + P  D
Sbjct: 243 HPYSRLLLDAEPDAD 257