Pairwise Alignments

Query, 535 a.a., ABC transporter nucleotide binding/ATPase (oligopeptide) from Agrobacterium fabrum C58

Subject, 603 a.a., ABC transporter permease from Agrobacterium fabrum C58

 Score =  300 bits (768), Expect = 1e-85
 Identities = 184/558 (32%), Positives = 292/558 (52%), Gaps = 40/558 (7%)

Query: 2   LLKIDNLKVEAKGEEGWSPILHGINLEVRRGEVVGLIGESGAGKSTLGLAALGFAHAGLR 61
           +L + NL      +  W  ++  ++ +V+ GE V ++GESG+GKS   L+ +        
Sbjct: 6   VLSVRNLTTSFLVDGEWKSVVRDVSFDVKSGETVAIVGESGSGKSVTSLSLMRLLAPASS 65

Query: 62  FAGGRVLVENVDLLRLTERERSAYRGRRVAYVAQSAAASFNPAWQLLDQFCEGPAIHGTA 121
              G VL+   +LL L+ERE    RG  ++ + Q    S NP + +  Q  E    H   
Sbjct: 66  HIEGEVLLNGRNLLTLSEREMRGVRGNDISMIFQEPMTSLNPIFTIGRQISEVLIRHKGL 125

Query: 122 SRPDCEILARQLYASMQLPDAANFGLRFPHQVSGGQLQRAMVAMAMACKPDLIVFDEPTT 181
           S+ +      +L   +++P+AA+    +PHQ SGG  QR M+AMA+A +P L++ DEPTT
Sbjct: 126 SKQEARAETVRLLEKVRIPNAASRFDEYPHQFSGGMRQRVMIAMALASRPKLLIADEPTT 185

Query: 182 ALDVTTQIGVLTAIRSAVETSETAAIYITHDLAVVAQMADRIKVMRHGREVEEAPTRQIM 241
           ALDVT Q  +L  I+   E    + ++ITHD+ VVA++ADR  VM  G  VE   T  I 
Sbjct: 186 ALDVTIQGQILDLIKLLQEEEGMSVLFITHDMGVVAEIADRTIVMYRGDAVETGATEDIF 245

Query: 242 QSPREDYTRSL--------------WAVR------------EFHRPERRLERNDAPVISI 275
           +  +  YTR+L              W  R            E       +     PV+S+
Sbjct: 246 RRGQHPYTRALLSAVPKLGSMHDRQWPTRFPVLDLKTGLSTEPQEVAETVACGQTPVLSV 305

Query: 276 NNVTASY-----------GHFDVLRDVAFEIPRGATVAVVGESGSGKSTAARVVTGLLPP 324
            N+   +           G    + +V+F++ +G T+++VGESG GKST  R +  L+ P
Sbjct: 306 KNLVTRFPIRSGLWARQTGAVHAVENVSFDLFQGETLSLVGESGCGKSTTGRSIMRLVEP 365

Query: 325 RIGSITLNGEVLPPSFSRRSREQLRKIQMIYQMADTALNPRQSIRQILCRP-LQFYVGLK 383
             G ++L+G  +    +   R   + +QMI+Q   ++LNPR ++   +  P ++  +G  
Sbjct: 366 SSGDVSLDGYDVMRLDTVGLRNMRKSVQMIFQDPFSSLNPRMTVGTAISEPFIKHRLGST 425

Query: 384 GAALERRLGELMEQIELSPRQFLHRVPGELSGGQKQRIGIARALAANPEIIICDEVTSAL 443
             A E +  +L+E++ LS     +R P E SGGQ+QRI IARALA +P++I+ DE  SAL
Sbjct: 426 KQAKE-KTADLLEKVGLS-ADMANRYPHEFSGGQRQRIAIARALALDPKVIVADESVSAL 483

Query: 444 DQLVAEGILRLLSRLQDETGISYMFITHDIDTVRAIADDVVVMKSGTVQDKGSKAEVMDP 503
           D  +   +  LL  LQ    ++++FI+HD+  V  ++  V VM  G + + G +A V D 
Sbjct: 484 DVSIKAQVCNLLLDLQQSLNLAFLFISHDMAVVERVSHRVAVMYLGEIVEIGPRAAVFDN 543

Query: 504 PRHHYTRQLLASVPQMDP 521
           P+H YT++L+A+VP  DP
Sbjct: 544 PQHPYTKKLMAAVPVPDP 561



 Score =  152 bits (384), Expect = 3e-41
 Identities = 101/271 (37%), Positives = 151/271 (55%), Gaps = 16/271 (5%)

Query: 271 PVISINNVTASY---GHF-DVLRDVAFEIPRGATVAVVGESGSGKSTAARVVTGLLPPRI 326
           PV+S+ N+T S+   G +  V+RDV+F++  G TVA+VGESGSGKS  +  +  LL P  
Sbjct: 5   PVLSVRNLTTSFLVDGEWKSVVRDVSFDVKSGETVAIVGESGSGKSVTSLSLMRLLAPAS 64

Query: 327 ----GSITLNGEVLPPSFSRRSREQLR--KIQMIYQMADTALNPRQSIRQILCRPLQFYV 380
               G + LNG  L  + S R    +R   I MI+Q   T+LNP  +I + +   L  + 
Sbjct: 65  SHIEGEVLLNGRNLL-TLSEREMRGVRGNDISMIFQEPMTSLNPIFTIGRQISEVLIRHK 123

Query: 381 GLKGAALERRLGELMEQIEL-SPRQFLHRVPGELSGGQKQRIGIARALAANPEIIICDEV 439
           GL           L+E++ + +        P + SGG +QR+ IA ALA+ P+++I DE 
Sbjct: 124 GLSKQEARAETVRLLEKVRIPNAASRFDEYPHQFSGGMRQRVMIAMALASRPKLLIADEP 183

Query: 440 TSALDQLVAEGILRLLSRLQDETGISYMFITHDIDTVRAIADDVVVMKSGTVQDKGSKAE 499
           T+ALD  +   IL L+  LQ+E G+S +FITHD+  V  IAD  +VM  G   + G+  +
Sbjct: 184 TTALDVTIQGQILDLIKLLQEEEGMSVLFITHDMGVVAEIADRTIVMYRGDAVETGATED 243

Query: 500 VMDPPRHHYTRQLLASVPQM----DPDWLRR 526
           +    +H YTR LL++VP++    D  W  R
Sbjct: 244 IFRRGQHPYTRALLSAVPKLGSMHDRQWPTR 274



 Score =  110 bits (275), Expect = 2e-28
 Identities = 73/243 (30%), Positives = 119/243 (48%), Gaps = 7/243 (2%)

Query: 22  LHGINLEVRRGEVVGLIGESGAGKSTLGLAALGFAHAGLRFAGGRVLVENVDLLRLTERE 81
           +  ++ ++ +GE + L+GESG GKST G + +         + G V ++  D++RL    
Sbjct: 329 VENVSFDLFQGETLSLVGESGCGKSTTGRSIMRLVEP----SSGDVSLDGYDVMRLDTVG 384

Query: 82  RSAYRGRRVAYVAQSAAASFNPAWQLLDQFCEGPAIHGTASRPDCEILARQLYASMQLPD 141
               R + V  + Q   +S NP   +     E    H   S    +     L   + L  
Sbjct: 385 LRNMR-KSVQMIFQDPFSSLNPRMTVGTAISEPFIKHRLGSTKQAKEKTADLLEKVGL-- 441

Query: 142 AANFGLRFPHQVSGGQLQRAMVAMAMACKPDLIVFDEPTTALDVTTQIGVLTAIRSAVET 201
           +A+   R+PH+ SGGQ QR  +A A+A  P +IV DE  +ALDV+ +  V   +    ++
Sbjct: 442 SADMANRYPHEFSGGQRQRIAIARALALDPKVIVADESVSALDVSIKAQVCNLLLDLQQS 501

Query: 202 SETAAIYITHDLAVVAQMADRIKVMRHGREVEEAPTRQIMQSPREDYTRSLWAVREFHRP 261
              A ++I+HD+AVV +++ R+ VM  G  VE  P   +  +P+  YT+ L A      P
Sbjct: 502 LNLAFLFISHDMAVVERVSHRVAVMYLGEIVEIGPRAAVFDNPQHPYTKKLMAAVPVPDP 561

Query: 262 ERR 264
            RR
Sbjct: 562 ARR 564