Pairwise Alignments

Query, 535 a.a., ABC transporter nucleotide binding/ATPase (oligopeptide) from Agrobacterium fabrum C58

Subject, 606 a.a., ABC transporter permease from Agrobacterium fabrum C58

 Score =  331 bits (848), Expect = 5e-95
 Identities = 199/568 (35%), Positives = 309/568 (54%), Gaps = 48/568 (8%)

Query: 2   LLKIDNLKVEAKGEEGWSPILHGINLEVRRGEVVGLIGESGAGKSTLGLAALGFAHA-GL 60
           LL ++ L VE     G S ++  I+  V  G  V ++GESG+GKS   L+ +  A   G 
Sbjct: 9   LLSVEGLSVEF----GDSRVVDDISFRVEPGRTVAVVGESGSGKSVTSLSTMRLADMMGA 64

Query: 61  RFAGGRVLVENVDLLRLTERERSAYRGRRVAYVAQSAAASFNPAWQLLDQFCEGPAIHGT 120
            +  G++L E  DLL+ +++E  + RG+ +A + Q    S NP + + DQ CE   +H  
Sbjct: 65  TYPTGKILFEGKDLLKASQKEMRSIRGKEIAMIFQEPMTSLNPVFTIGDQICEVLVLHEK 124

Query: 121 ASRPDCEILARQLYASMQLPDAANFGLRFPHQVSGGQLQRAMVAMAMACKPDLIVFDEPT 180
             +      A+QL   ++LPDAA    R+PHQ+SGG  QR M+AMA+AC+P L++ DEPT
Sbjct: 125 LGKTAAMEQAKQLLDMVRLPDAAELLHRYPHQLSGGMRQRVMIAMALACRPKLLIADEPT 184

Query: 181 TALDVTTQIGVLTAIRSAVETSETAAIYITHDLAVVAQMADRIKVMRHGREVEEAPTRQI 240
           TALDVT Q  +L  +R   +      ++ITHD+ VVA+MAD + VM  G++VEE P + I
Sbjct: 185 TALDVTIQAQILNIMRDLQKKLGMGMVFITHDMGVVAEMADDVVVMWKGKKVEEGPVKDI 244

Query: 241 MQSPREDYTRSLWA----------------------------VREFHRPERRLERNDAPV 272
             +P+  YTR+L +                            V    R +   + +  P+
Sbjct: 245 FANPQHPYTRALLSAVPRLGSMEGEAFPKRLPLTVLQDGQPVVIGEERVQDTAKYDQKPL 304

Query: 273 ISINNVTASYG-----------HFDVLRDVAFEIPRGATVAVVGESGSGKSTAARVVTGL 321
           +S+ ++   +                ++ V+F+I  G T+A+VGESGSGKST  R +  L
Sbjct: 305 LSVKDLFVRFDIRKNLFGKATHRLSAVQKVSFDIHAGETLALVGESGSGKSTIGRTIQQL 364

Query: 322 LPPRIGSITLNGEVLPPSFSRRSREQLRKIQMIYQMADTALNPRQSIRQILCRPLQFYVG 381
                G I  NG       +       +++Q I+Q    +L+PR+++   +  P+  + G
Sbjct: 365 QTAVSGEIAFNGRSYSQMSAAERFRMRQEVQYIFQDPFASLDPRKTVGFSIAEPINTH-G 423

Query: 382 L--KGAALERRLGELMEQIELSPRQFLHRVPGELSGGQKQRIGIARALAANPEIIICDEV 439
           L     A+ RR+ EL+E++ LS  +   R P E SGGQ+QR+ IARALA++P++II DE 
Sbjct: 424 LINDQKAVRRRVDELLERVGLS-SEHAARYPHEFSGGQRQRVCIARALASDPKLIIADEA 482

Query: 440 TSALDQLVAEGILRLLSRLQDETGISYMFITHDIDTVRAIADDVVVMKSGTVQDKGSKAE 499
            SALD  +   I+ L   LQ E G++Y+FI+HD+  V  ++  V V+  G + + GS+ +
Sbjct: 483 LSALDVSIQAQIINLFMDLQAERGLAYLFISHDMAVVEKMSHRVAVLYLGQIMELGSRQQ 542

Query: 500 VMDPPRHHYTRQLLASVPQMDPDWLRRL 527
           V + P H YTR+LL++VP  DP   RR+
Sbjct: 543 VFETPTHDYTRRLLSAVPVADPTIERRI 570



 Score =  157 bits (397), Expect = 1e-42
 Identities = 94/260 (36%), Positives = 151/260 (58%), Gaps = 9/260 (3%)

Query: 268 NDAPVISINNVTASYGHFDVLRDVAFEIPRGATVAVVGESGSGKSTAARVVTGLLPPRIG 327
           N   ++S+  ++  +G   V+ D++F +  G TVAVVGESGSGKS  + + T  L   +G
Sbjct: 5   NANALLSVEGLSVEFGDSRVVDDISFRVEPGRTVAVVGESGSGKSVTS-LSTMRLADMMG 63

Query: 328 SITLNGEVL--PPSFSRRSREQLRKIQ-----MIYQMADTALNPRQSIRQILCRPLQFYV 380
           +    G++L       + S++++R I+     MI+Q   T+LNP  +I   +C  L  + 
Sbjct: 64  ATYPTGKILFEGKDLLKASQKEMRSIRGKEIAMIFQEPMTSLNPVFTIGDQICEVLVLHE 123

Query: 381 GLKGAALERRLGELMEQIEL-SPRQFLHRVPGELSGGQKQRIGIARALAANPEIIICDEV 439
            L   A   +  +L++ + L    + LHR P +LSGG +QR+ IA ALA  P+++I DE 
Sbjct: 124 KLGKTAAMEQAKQLLDMVRLPDAAELLHRYPHQLSGGMRQRVMIAMALACRPKLLIADEP 183

Query: 440 TSALDQLVAEGILRLLSRLQDETGISYMFITHDIDTVRAIADDVVVMKSGTVQDKGSKAE 499
           T+ALD  +   IL ++  LQ + G+  +FITHD+  V  +ADDVVVM  G   ++G   +
Sbjct: 184 TTALDVTIQAQILNIMRDLQKKLGMGMVFITHDMGVVAEMADDVVVMWKGKKVEEGPVKD 243

Query: 500 VMDPPRHHYTRQLLASVPQM 519
           +   P+H YTR LL++VP++
Sbjct: 244 IFANPQHPYTRALLSAVPRL 263



 Score =  110 bits (274), Expect = 2e-28
 Identities = 77/270 (28%), Positives = 132/270 (48%), Gaps = 14/270 (5%)

Query: 25  INLEVRRGEVVGLIGESGAGKSTLGLAALGFAHAGLRFAGGRVLVENVDLLRLTERERSA 84
           ++ ++  GE + L+GESG+GKST+G        A      G +        +++  ER  
Sbjct: 334 VSFDIHAGETLALVGESGSGKSTIGRTIQQLQTA----VSGEIAFNGRSYSQMSAAERFR 389

Query: 85  YRGRRVAYVAQSAAASFNPAWQLLDQFCEGPAIHGTASRPDCEILARQLYASMQLPD-AA 143
            R + V Y+ Q   AS +P   +     E    HG  +  D + + R++   ++    ++
Sbjct: 390 MR-QEVQYIFQDPFASLDPRKTVGFSIAEPINTHGLIN--DQKAVRRRVDELLERVGLSS 446

Query: 144 NFGLRFPHQVSGGQLQRAMVAMAMACKPDLIVFDEPTTALDVTTQIGVLTAIRSAVETSE 203
               R+PH+ SGGQ QR  +A A+A  P LI+ DE  +ALDV+ Q  ++           
Sbjct: 447 EHAARYPHEFSGGQRQRVCIARALASDPKLIIADEALSALDVSIQAQIINLFMDLQAERG 506

Query: 204 TAAIYITHDLAVVAQMADRIKVMRHGREVEEAPTRQIMQSPREDYTRSLWAVREFHRP-- 261
            A ++I+HD+AVV +M+ R+ V+  G+ +E    +Q+ ++P  DYTR L +      P  
Sbjct: 507 LAYLFISHDMAVVEKMSHRVAVLYLGQIMELGSRQQVFETPTHDYTRRLLSAVPVADPTI 566

Query: 262 ERRLERNDA----PVISINNVTASYGHFDV 287
           ERR+   +     PV  + +  A   H ++
Sbjct: 567 ERRIAMIEGEIPNPVRRVGDEPAILAHEEI 596