Pairwise Alignments

Query, 535 a.a., ABC transporter nucleotide binding/ATPase (oligopeptide) from Agrobacterium fabrum C58

Subject, 616 a.a., ABC transporter permease from Agrobacterium fabrum C58

 Score =  307 bits (786), Expect = 9e-88
 Identities = 186/558 (33%), Positives = 294/558 (52%), Gaps = 40/558 (7%)

Query: 2   LLKIDNLKVEAKGEEGWSPILHGINLEVRRGEVVGLIGESGAGKSTLGLAALGFAHAGLR 61
           +L + NL    + + GW  ++  ++ ++   E V ++GESG+GKS   L+ +        
Sbjct: 18  VLSVQNLTTSFRVDGGWKSVVRNMSFDIAPRETVAIVGESGSGKSVTSLSIMRLLDRKTS 77

Query: 62  FAGGRVLVENVDLLRLTERERSAYRGRRVAYVAQSAAASFNPAWQLLDQFCEGPAIHGTA 121
              G+V++   DLL L E E    RG+ ++ + Q    S NP + +  Q  E   +H   
Sbjct: 78  RIEGKVMLGGRDLLALPEEEMRKVRGKDISMIFQEPMTSLNPIFPIGKQIAEALTVHQDI 137

Query: 122 SRPDCEILARQLYASMQLPDAANFGLRFPHQVSGGQLQRAMVAMAMACKPDLIVFDEPTT 181
           S    +    +L   +++P+AA+    +PHQ SGG  QR M+AMA+A KP L++ DEPTT
Sbjct: 138 SSSAAKAEVIRLLEKVRIPNAASRFGDYPHQFSGGMRQRVMIAMALASKPKLLIADEPTT 197

Query: 182 ALDVTTQIGVLTAIRSAVETSETAAIYITHDLAVVAQMADRIKVMRHGREVEEAPTRQIM 241
           ALDVT Q  +L  I+   E    + ++ITHD+ VVA++ADR  VM  G  VE   T  I 
Sbjct: 198 ALDVTIQGQILDLIKQLQEEEGMSVLFITHDMGVVAEVADRTIVMFRGDVVETGTTDDIF 257

Query: 242 QSPREDYTRSLW-AVREFHRPERRL-------------------ERND------APVISI 275
              +  YTR+L  AV +      RL                   E  D       P++S+
Sbjct: 258 HRGQHPYTRALLSAVPKLGSMRSRLLPARFPIIDIKTGESPPVVETKDTVSGGKTPILSV 317

Query: 276 NNVTASY-----------GHFDVLRDVAFEIPRGATVAVVGESGSGKSTAARVVTGLLPP 324
            ++T  +           G    +  V+F++  G T+++VGESG GKST  R +T L+ P
Sbjct: 318 KDLTTRFDIRSGLFGRKSGAVHAVEKVSFDLAEGETLSLVGESGCGKSTTGRSITRLIEP 377

Query: 325 RIGSITLNGEVLPPSFSRRSREQLRKIQMIYQMADTALNPRQSIRQILCRP-LQFYVGLK 383
             G++TL+G  +        R   R +QM++Q    +L+PR S+   +  P ++  +G K
Sbjct: 378 TSGNVTLDGYEVLKLDRTTLRTMRRSVQMVFQDPFASLDPRMSVGTAIMEPFMEHRLGQK 437

Query: 384 GAALERRLGELMEQIELSPRQFLHRVPGELSGGQKQRIGIARALAANPEIIICDEVTSAL 443
             A E +  +L+E++ LSP   + R P E SGGQ+QRI IAR+L  +P++I+ DE  SAL
Sbjct: 438 AQARE-KAADLLEKVGLSP-DMMKRFPHEFSGGQRQRIAIARSLMLDPKVIVADEAVSAL 495

Query: 444 DQLVAEGILRLLSRLQDETGISYMFITHDIDTVRAIADDVVVMKSGTVQDKGSKAEVMDP 503
           D  +   +  LL  LQ    ++++FI+HD+  V  ++  V VM  G + + G +A V D 
Sbjct: 496 DVSIKAQVCNLLLDLQQSLNLAFLFISHDMAVVERVSHRVAVMYLGEIVEIGPRAAVFDN 555

Query: 504 PRHHYTRQLLASVPQMDP 521
           P+H YT++L+++VP  DP
Sbjct: 556 PQHPYTKKLMSAVPVPDP 573



 Score =  149 bits (376), Expect = 3e-40
 Identities = 97/275 (35%), Positives = 154/275 (56%), Gaps = 14/275 (5%)

Query: 270 APVISINNVTASY----GHFDVLRDVAFEIPRGATVAVVGESGSGKSTAARVVTGLLPPR 325
           +PV+S+ N+T S+    G   V+R+++F+I    TVA+VGESGSGKS  +  +  LL  +
Sbjct: 16  SPVLSVQNLTTSFRVDGGWKSVVRNMSFDIAPRETVAIVGESGSGKSVTSLSIMRLLDRK 75

Query: 326 I----GSITLNGE---VLPPSFSRRSREQLRKIQMIYQMADTALNPRQSIRQILCRPLQF 378
                G + L G     LP    R+ R   + I MI+Q   T+LNP   I + +   L  
Sbjct: 76  TSRIEGKVMLGGRDLLALPEEEMRKVRG--KDISMIFQEPMTSLNPIFPIGKQIAEALTV 133

Query: 379 YVGLKGAALERRLGELMEQIEL-SPRQFLHRVPGELSGGQKQRIGIARALAANPEIIICD 437
           +  +  +A +  +  L+E++ + +        P + SGG +QR+ IA ALA+ P+++I D
Sbjct: 134 HQDISSSAAKAEVIRLLEKVRIPNAASRFGDYPHQFSGGMRQRVMIAMALASKPKLLIAD 193

Query: 438 EVTSALDQLVAEGILRLLSRLQDETGISYMFITHDIDTVRAIADDVVVMKSGTVQDKGSK 497
           E T+ALD  +   IL L+ +LQ+E G+S +FITHD+  V  +AD  +VM  G V + G+ 
Sbjct: 194 EPTTALDVTIQGQILDLIKQLQEEEGMSVLFITHDMGVVAEVADRTIVMFRGDVVETGTT 253

Query: 498 AEVMDPPRHHYTRQLLASVPQMDPDWLRRLNADKP 532
            ++    +H YTR LL++VP++     R L A  P
Sbjct: 254 DDIFHRGQHPYTRALLSAVPKLGSMRSRLLPARFP 288



 Score =  107 bits (268), Expect = 1e-27
 Identities = 76/248 (30%), Positives = 117/248 (47%), Gaps = 10/248 (4%)

Query: 25  INLEVRRGEVVGLIGESGAGKSTLGLAALGFAHAGLRFAGGRVLVENVDLLRLTERERSA 84
           ++ ++  GE + L+GESG GKST G +             G V ++  ++L+L       
Sbjct: 344 VSFDLAEGETLSLVGESGCGKSTTGRSITRLIEP----TSGNVTLDGYEVLKLDRTTLRT 399

Query: 85  YRGRRVAYVAQSAAASFNPAWQLLDQFCEGPAIHGTASRPDCEILARQLYASMQL-PDAA 143
            R R V  V Q   AS +P   +     E    H    +      A  L   + L PD  
Sbjct: 400 MR-RSVQMVFQDPFASLDPRMSVGTAIMEPFMEHRLGQKAQAREKAADLLEKVGLSPDMM 458

Query: 144 NFGLRFPHQVSGGQLQRAMVAMAMACKPDLIVFDEPTTALDVTTQIGVLTAIRSAVETSE 203
               RFPH+ SGGQ QR  +A ++   P +IV DE  +ALDV+ +  V   +    ++  
Sbjct: 459 K---RFPHEFSGGQRQRIAIARSLMLDPKVIVADEAVSALDVSIKAQVCNLLLDLQQSLN 515

Query: 204 TAAIYITHDLAVVAQMADRIKVMRHGREVEEAPTRQIMQSPREDYTRSLWAVREFHRPER 263
            A ++I+HD+AVV +++ R+ VM  G  VE  P   +  +P+  YT+ L +      P R
Sbjct: 516 LAFLFISHDMAVVERVSHRVAVMYLGEIVEIGPRAAVFDNPQHPYTKKLMSAVPVPDPAR 575

Query: 264 R-LERNDA 270
           R + RN A
Sbjct: 576 RQIRRNMA 583