Pairwise Alignments

Query, 295 a.a., hypothetical protein from Agrobacterium fabrum C58

Subject, 310 a.a., 2-deoxy-3-keto-D-ribonoate cleavage enzyme (from data) from Pseudomonas simiae WCS417

 Score =  168 bits (426), Expect = 1e-46
 Identities = 111/321 (34%), Positives = 161/321 (50%), Gaps = 46/321 (14%)

Query: 2   NRDVFITCAVTGSGQSHTKSSLVPITPAQIADACIEAAKAGAAIAHVHVRDPDTGAPSRD 61
           NR V ITCAVTG+  + + S  +PIT  +IADA I AA+AGAAI H+H RDP+ G PS+D
Sbjct: 4   NRPVIITCAVTGAIHTPSMSPHLPITAQEIADAAIGAAEAGAAIVHLHARDPNDGRPSQD 63

Query: 62  PALYREVVERVRASDTDVVLNLTAGMGGDIVLGSAEAPLPLAPQSDLVGATERLVHVEEL 121
           PAL+ E + +++A+ +DVV+N+T G                   +  +G  ERL  V + 
Sbjct: 64  PALFAEFLPQIKAA-SDVVINITTG------------------GAPTMGVEERLQPVMQF 104

Query: 122 LPEICTLDCGTMNFA----------------------EADYVMTNTPGTLRAMARRIQAA 159
            PE+ +L+ G+MNF                         D +  NT   +  +       
Sbjct: 105 KPELASLNMGSMNFGLYEMLNRFTDFKHDWERPYLEESDDRIFRNTFRDITHILNACAEN 164

Query: 160 GVRPEIEVFDTGHLWLAKTLVDEGLIDDPVMIQLCMGIPYGA---PADINSLMAMVNNI- 215
             R EIE +D GHL+ A   ++ GL+  P+ IQ   G+  G    P D+  +    + + 
Sbjct: 165 RTRFEIECYDIGHLYTAAHFLERGLLKPPLFIQSVFGLRGGIGGHPEDLAHMRRTADRLF 224

Query: 216 PQGWTYSMFSIGRMQLPYVAQAALAGGHVRVGLEDNIWLDRGVL-ARNGDLVERAATILT 274
              + +S+   GR Q+P        G + RVGLED++W   G L A N D V R  T++ 
Sbjct: 225 GSDYVWSILGAGRGQIPLATMGLSMGSNARVGLEDSLWDGPGKLAASNADQVRRIRTVIE 284

Query: 275 AMGCRILTPQEVREKLKLLRR 295
           A+G R+ TP E RE L L  R
Sbjct: 285 ALGHRVATPDEAREILGLKGR 305