Pairwise Alignments

Query, 519 a.a., ABC transporter substrate binding protein (oligopeptide) from Agrobacterium fabrum C58

Subject, 533 a.a., peptide ABC transporter substrate-binding protein from Pseudomonas simiae WCS417

 Score =  126 bits (316), Expect = 2e-33
 Identities = 134/526 (25%), Positives = 213/526 (40%), Gaps = 54/526 (10%)

Query: 6   VLLLTSLIGLVAQPVMAKNLTIGLSGTVTSIDPHFYNASPN-NAIAMQIFDRLTERTAEG 64
           +LL   L+  +     A  L      +    DP  Y +  + +A A  +F+RLT+    G
Sbjct: 9   LLLAAGLLACMPLAQAASTLVYCSEASPAGFDPSQYTSGTDFDASAETVFNRLTQFKRGG 68

Query: 65  RLVE-GLATKWDTVSE-TKWRFALRDGVKWHDG------KPFTSDDVIFTLDRA------ 110
             VE GLAT WD   +   + F LRDGVK+H        + F +DDV+FT +R       
Sbjct: 69  TEVEPGLATSWDISQDGLTYTFHLRDGVKFHTTDFFSPTRDFNADDVLFTFNRLLDAQSP 128

Query: 111 --GSVPNSPGGFG--GFMRNIASVEADGDNAVIISTKAPAPTLPGDLANIAIVSRHAGEG 166
              + P+    F   G    I SV+   D+ V  +      +   +LA ++  S  + E 
Sbjct: 129 FRQAYPSESPYFTDMGLNTTIKSVDKLDDHTVRFNLNNVDASFVQNLA-MSFASVQSAEY 187

Query: 167 ADTADYNSGKAA------IGTGAFRLTTFKQGIEVGLERNPDWWGKK-VAWDHATYRMIS 219
           A       GKA       +GTG F    +++  ++    N  +W  + V  D+  + +  
Sbjct: 188 AAQL-LKQGKAEEINQKPVGTGPFVFKRYQKDSQIRYVANKQYWKPEDVKLDNLVFAITP 246

Query: 220 SASARTTAALAGDVDVIDAPAATDIARFKTTANLSFVSTPGLRVIYLAPSTSGDAWKAFV 279
            A++R     AG+  V   P   DI   K   NL  +   G  + +LA + +        
Sbjct: 247 DAASRLQKLKAGECQVSGYPRPADIEVMKQDPNLHVLQQAGFNLGFLAYNVT-------- 298

Query: 280 KGPKGEALDNNPLADPRVRNALSEAINREGIVDKIMEGTATASGQWLPKGAFSYTPDIQP 339
                    + PL   +VR AL  AI++  I+  + +     +   LP   +SY P I+ 
Sbjct: 299 ---------HPPLDQLKVRQALDMAIDKPAIIKAVYQSAGQLAQNALPPAQWSYDPTIKD 349

Query: 340 PKPDAAGAKKLLADAGYPDGFQL---TVHVPNDRYPNAPAVVQAVAQMWTRIGVKTNVEA 396
              D   AK LL +AG   G  +    + V     PNA    Q + Q W ++G+K N+ +
Sbjct: 350 APYDPTKAKALLKEAGVAPGTTVNLWAMTVQRASNPNARMSAQMIQQDWEKVGIKANIVS 409

Query: 397 LPWTTFSSR--KSEFAMKLLGLGNATYDASSMLVNVLGTVDPKRGLGAANDSGYSNPALD 454
             W  +  R    E    + G      D      N LG +     +  +N + + NPA D
Sbjct: 410 YEWGEYIKRAKNGEHDAMIYGWTGDNGDPD----NWLGVLYSCAAVKGSNYAKWCNPAYD 465

Query: 455 DLVSKAMMIYDDKAREAALIEAVKVAITDGAIIPLYQQSNAWVLRK 500
            LV +A +  D + R     +A K+      I P+   +    LRK
Sbjct: 466 KLVQQAKVSNDREQRIKWYQQAQKILKEQVPITPIANSTVFQPLRK 511