Pairwise Alignments

Query, 519 a.a., ABC transporter substrate binding protein (oligopeptide) from Agrobacterium fabrum C58

Subject, 527 a.a., ABC transporter, substrate-binding protein (cluster 5, nickel/peptides/opines) from Variovorax sp. SCN45

 Score =  234 bits (598), Expect = 4e-66
 Identities = 165/506 (32%), Positives = 241/506 (47%), Gaps = 33/506 (6%)

Query: 13  IGLVAQPVMAKNLTIGLSGTVTSIDPHFYNASPNNAIAMQIFDRLTERTAEGRLVEGLAT 72
           +G V+    A+ + I   G   S+DPH  N S   ++   +++ L  R  +  L   LAT
Sbjct: 16  LGAVSMVASAQTIRIANQGDALSLDPHSLNESLQLSVTANVYETLVGRNKDLSLAPLLAT 75

Query: 73  KWDTVSETKWRFALRDGVKWHDGKPFTSDDVIFTLDRAGSVPNSPGGFGGFMR----NIA 128
            W   S   WRF LR GV +HDG PFT+DDV+F+  RA        G G  MR    +I 
Sbjct: 76  SWKQTSPNVWRFELRKGVVFHDGTPFTADDVVFSFARA-------QGDGSDMRATLSDIK 128

Query: 129 SVEADGDNAVIISTKAPAPTLPGDLANIAIVSR---HAGEGADTADYNSG------KAAI 179
           +V   GD AV I T  P P LP  ++   I+S+      +     D   G        A 
Sbjct: 129 AVRKVGDLAVEIETNGPFPILPDVISLTMIMSKKWCEENQATKPVDRRKGIENTASFKAN 188

Query: 180 GTGAFRLTTFKQGIEVGLERNPDWWGK-KVAWDHATYRMISSASARTTAALAGDVDVIDA 238
           GTG FR+   +  +     RN  +WGK         +  I++ + R  A ++G+VDV++ 
Sbjct: 189 GTGPFRVRERQPNVRTVFTRNGTYWGKIDGNAQEVIFTPIANPATRVAALVSGEVDVMEP 248

Query: 239 PAATDIARFKTTANLSFVSTPGLRVIYLAPSTSGDAWK-AFVKGPKGEALDNNPLADPRV 297
               DIAR     N   ++ P +R I+L      D  + + VKG        NP  D RV
Sbjct: 249 VPVQDIARINAAPNARVITGPEMRTIFLGMDQKRDELQYSNVKG-------KNPFKDKRV 301

Query: 298 RNALSEAINREGIVDKIMEGTATASGQWLPKGAFSYTPDIQPPKP-DAAGAKKLLADAGY 356
           R A  +AI+  GI   +M G +  +   +  G   +T +     P D   AKKLL +AGY
Sbjct: 302 RQAFYQAIDIAGIQRTVMRGASRPTALLVGPGINGWTAEQDKRLPYDVEAAKKLLTEAGY 361

Query: 357 PDGFQLTVHVPNDRYPNAPAVVQAVAQMWTRIGVKTNVEALPWTTFSSR--KSEFAMKLL 414
           P+GF+++++ PNDRY N   + Q+VA    +IGVK N+ A    T+  +  + + +  +L
Sbjct: 362 PNGFEVSLNCPNDRYVNDGQICQSVASNLAKIGVKINLVAETKGTYFPKVLRRDTSFYML 421

Query: 415 GLGNATYDASSMLVNVLGTVDPKRGLGAANDSGYSNPALDDLVSKAMMIYDDKAREAALI 474
           G    TYD+ + L ++    D K G G  N   Y NP LD+L  K     D   R   + 
Sbjct: 422 GWTPTTYDSHNALSSLTSCPDDK-GTGQFNLGAYCNPKLDELTKKIQSEGDKDKRNEMIK 480

Query: 475 EAVKVAITDGAIIPLYQQSNAWVLRK 500
           EA K+   D   +PL+QQS AW + K
Sbjct: 481 EAFKIHADDVGHLPLHQQSLAWGVSK 506