Pairwise Alignments

Query, 519 a.a., ABC transporter substrate binding protein (oligopeptide) from Agrobacterium fabrum C58

Subject, 533 a.a., ABC transporter, substrate-binding protein (cluster 5, nickel/peptides/opines) from Variovorax sp. SCN45

 Score =  127 bits (320), Expect = 8e-34
 Identities = 134/500 (26%), Positives = 211/500 (42%), Gaps = 34/500 (6%)

Query: 7   LLLTSLIGLVAQPVMAKNLTIGLSGTVTSIDPHFYNASPNNAIAMQIFDRLTERTAEGRL 66
           LL   L    A P  +  LT+  +   T++      A+P  +++ ++ + L +   +   
Sbjct: 18  LLAAGLAAHAAPPSHSGTLTLLSTSEPTALVTIGNVATPILSVSAKVTEGLLKYDYDVNP 77

Query: 67  VEGLATKWDTVSE-TKWRFALRDGVKWHDGKPFTSDDVIFTLDRAGSVPNSPGGFGGFMR 125
              LATKW    +   + F LR GVKWHDGK FTS DV ++++    +   P G   F  
Sbjct: 78  QPQLATKWVISPDGLTYTFTLRQGVKWHDGKDFTSADVAYSIELLKKI--HPRGRNTFA- 134

Query: 126 NIASVEADGDNAVIISTKAPAPTLPGDLA--NIAIVSRHAGEGADTADYNSGKAAIGTGA 183
           N+ +++       I+    PAP L   L      IV +H  EG D A+  +  A IGTG 
Sbjct: 135 NLTAIDTPDKYTAILRLSKPAPYLIRALVATETPIVPKHIYEGTDPANNPNNNAPIGTGP 194

Query: 184 FRLTTFKQGIEVGLERNPDWWGK-KVAWDHATYRMISSASARTTAALAGDVDV---IDAP 239
           F+   + +G  +  ERN D+W K K   D    R ++  +A   A   G VD+      P
Sbjct: 195 FKFKEWVRGSHIVYERNNDYWDKPKPFVDQLIVRFVTDPAAAAVAFETGTVDLGYRTPVP 254

Query: 240 AATDIARFKTTANLSFVSTPGLRVIYLAPSTSGDAWKAFVKGPKGEALDNNPLADPRVRN 299
            A D+ R K    L F              T G+++ + V   +   LDN    + +VR 
Sbjct: 255 LA-DLERLKKVPALRF-------------ETKGNSYSSNVTRLEFN-LDNEYFKNEKVRQ 299

Query: 300 ALSEAINREGIVDKIMEGTATASGQWLPKGAFSY-TPDIQPPKPDAAGAKKLLADAGYP- 357
           A++ AI+R  IV  +  G    S   +  G  ++  P   P   D   A  LL +AG+P 
Sbjct: 300 AVAHAIDRNVIVKVVNYGYGQVSYSPIAPGLKAFHDPAPSPYAFDVKKANALLDEAGFPK 359

Query: 358 DGFQLTVHVPNDRYP---NAPAVVQAVAQMWTRIGVKTNVEALPWTTFSSR---KSEFAM 411
               +   VP D  P   + P +   +     RIG+   V A   + F  R     +FA 
Sbjct: 360 KAGGVRFSVPLDFNPIGADGPRLADYLRSALARIGIAVTVRAQDPSAFIKRIYTDRDFAF 419

Query: 412 KLLGLGNATYDASSMLVNVLGTVDPKRGLGAANDSGYSNPALDDLVSKAMMIYDDKAREA 471
              G  N  +D +  +  +  + +  +G+  +N + Y NP +D L+  A +  D   R  
Sbjct: 420 THNGASN-LFDPTVGVQRLYWSKNFIKGVPFSNGTHYQNPVVDKLLEDAAVENDPGKRLK 478

Query: 472 ALIEAVKVAITDGAIIPLYQ 491
              +       D   + LYQ
Sbjct: 479 LFKDFQDTVARDVPDLNLYQ 498