Pairwise Alignments

Query, 519 a.a., ABC transporter substrate binding protein (oligopeptide) from Agrobacterium fabrum C58

Subject, 521 a.a., ABC transporter, substrate-binding protein (cluster 5, nickel/peptides/opines) from Variovorax sp. SCN45

 Score =  432 bits (1111), Expect = e-125
 Identities = 212/499 (42%), Positives = 305/499 (61%), Gaps = 3/499 (0%)

Query: 22  AKNLTIGLSGTVTSIDPHFYNASPNNAIAMQIFDRLTERTAEGRLVEGLATKWDTVSETK 81
           A+ L+IG +  V+S+DP   N + + ++A+  +D +      G+L   LA+ W  + +  
Sbjct: 21  AQTLSIGFADPVSSVDPELNNHAGDRSLALHFWDSIINSRDGGKLEPALASSWKALDDKT 80

Query: 82  WRFALRDGVKWHDGKPFTSDDVIFTLDRAGSVPNSPGGFGGFMRNIASVEADGDNAVIIS 141
           W F LR  +KW DG PF++DD++F+  R+ +VP S   + G +R + SV A     +I+ 
Sbjct: 81  WEFKLRTDIKWQDGTPFSADDIVFSFQRSRNVPGSVASYSGALRTVESVTAKDPATLIVK 140

Query: 142 TKAPAPTLPGDLANIAIVSRHAGEGADTADYNSGKAAIGTGAFRLTTFKQGIEVGLERNP 201
           T  P P LP ++A+I IVS+H GE + T DYN+G+A +GTG ++  ++  G     ERNP
Sbjct: 141 TNTPNPMLPLEIASIYIVSKHVGEKSKTEDYNAGRAVVGTGPYKFVSYVPGDRTVFERNP 200

Query: 202 DWWGKKVAWDHATYRMISSASARTTAALAGDVDVIDAPAATDIARFKTTANLSFVSTPGL 261
            ++G K  W+   YR I++ +ART A LAGDVDVID  A TD+ + +    +S  + PGL
Sbjct: 201 GYYGPKPLWEKVNYRFINNGAARTAALLAGDVDVIDKVAVTDVEKLRKDPKVSVYTYPGL 260

Query: 262 RVIYLAPSTSGDAWKAFVKGPKGEALDNNPLADPRVRNALSEAINREGIVDKIMEGTATA 321
           RV+ L P+        F+    G+ L+ NPL D RVR ALS AINR+ IVD++++GT T 
Sbjct: 261 RVLLLQPTFKAGP-NEFITDNAGKPLEKNPLLDVRVRQALSLAINRKAIVDRVLQGTVTE 319

Query: 322 SGQWLPKGAFSYTPDIQPPKPDAAGAKKLLADAGYPDGFQLTVHVPNDRYPNAPAVVQAV 381
           + QW+PKG+F Y PD++    +A  AKKLLA+AG+P GFQ+ +HVP DRYP AP  VQAV
Sbjct: 320 ANQWMPKGSFGYNPDVKDIAYNAEQAKKLLAEAGFPQGFQIAIHVPGDRYPQAPETVQAV 379

Query: 382 AQMWTRIGVKTNVEALPWTTFSSR--KSEFAMKLLGLGNATYDASSMLVNVLGTVDPKRG 439
           AQ W+RIGVKT VE +PW  +S R  K+E+A+ ++  GN T +A   L+  L T D KRG
Sbjct: 380 AQFWSRIGVKTKVEVVPWAVYSGRANKNEYAVSVIAWGNGTGEAGYGLLQTLTTPDAKRG 439

Query: 440 LGAANDSGYSNPALDDLVSKAMMIYDDKAREAALIEAVKVAITDGAIIPLYQQSNAWVLR 499
            G+ N   YSN ++D  +  A + +D K REA    A K+   D   IPLY   N W  +
Sbjct: 440 RGSNNWGRYSNESVDKALDAATVEFDAKRREAIFRHAAKLVTDDVGQIPLYHYQNIWAAK 499

Query: 500 KGLNYAPRIDERTLAKDVS 518
           KGL   P + +RT A  V+
Sbjct: 500 KGLKVVPLLSDRTTAMQVT 518