Pairwise Alignments

Query, 519 a.a., ABC transporter substrate binding protein (oligopeptide) from Agrobacterium fabrum C58

Subject, 541 a.a., dipeptide ABC transporter - periplasmic binding protein from Pseudomonas putida KT2440

 Score =  148 bits (373), Expect = 6e-40
 Identities = 145/527 (27%), Positives = 229/527 (43%), Gaps = 51/527 (9%)

Query: 7   LLLTSLIGLVAQPVMAKNLTIGLSGTVTSIDPHFYNASPN-NAIAMQIFDRLTERTAEGR 65
           LL   L+      V A NL     G+    DP  Y    + +A A  +F+RLT+    G 
Sbjct: 10  LLGAGLLSGAPSAVAASNLVFCSEGSPAGFDPGQYTTGTDFDASAETVFNRLTQFERGGT 69

Query: 66  -LVEGLATKWDTVSETK-WRFALRDGVKWHD------GKPFTSDDVIFTLDRAGSVPNS- 116
            ++ GLATKW+   + K + F LR+GVK+H        +PF +DDV+FT +R     N  
Sbjct: 70  AVIPGLATKWEVSDDGKTYTFHLREGVKFHTTDYFKPSRPFNADDVLFTFNRMLDKDNPF 129

Query: 117 ----PGGFG-----GFMRNIASVEADGDNAVIISTKAPAPTLPGDLANIAIVSRHAGEGA 167
               P  F      G  +NIA VE   ++ V  +          +LA ++  S  + E A
Sbjct: 130 RKAYPTEFPYFTDMGMDKNIAKVEKLDEHTVKFTLNEVDAAFIQNLA-MSFASIQSAEYA 188

Query: 168 DTADYNSGKAA------IGTGAFRLTTFKQGIEVGLERNPDWWGKK-VAWDHATYRMISS 220
           D    N GKAA      IGTG F  + +++  ++  + N D+W  + V  D+  + + + 
Sbjct: 189 DQLLKN-GKAADINQKPIGTGPFVFSKYQKDAQIRFKGNKDYWQPEDVKIDNLIFAITTD 247

Query: 221 ASARTTAALAGDVDVIDAPAATDIARFKTTANLSFVSTPGLRVIYLAPSTSGDAWKAFVK 280
           AS R       +  V   P   DI   K   NL      G  + Y+A +         +K
Sbjct: 248 ASVRMQKLKKNECQVTLFPRPADIEPLKADKNLQMPQQAGFNLGYIAYNVMDK-----IK 302

Query: 281 GPKGEALDNNPLADPRVRNALSEAINREGIVDKIMEGTATASGQWLPKGAFSYTPDIQPP 340
           G      + NP+A  +VR AL  A++++ I++ + +G    +   +P   +SY   I+  
Sbjct: 303 GSN----EANPMAQLKVRQALDMAVDKKKIIESVYQGAGQLAVNAMPPTQWSYDDSIKDA 358

Query: 341 KPDAAGAKKLLADAGYPDGFQLT---VHVPNDRYPNAPAVVQAVAQMWTRIGVKTNVEAL 397
             D   AK+LL +AG  +G ++T   + V     PNA  + + +   W +IG+K  + + 
Sbjct: 359 AFDPEKAKQLLKEAGIKEGTEITLWAMPVQRPYNPNAKLMAEMLQSDWAKIGIKAKIVSY 418

Query: 398 PWTTF--SSRKSEFAMKLLGLGNATYDASSMLVNVLGTVDPKRGLGAANDSGYSNPALDD 455
            W  +   S+  E    L+G      D      N LGT+     +   N S +     DD
Sbjct: 419 EWGEYIKRSKGGEQGAMLIGWSGDNGDPD----NWLGTLYGCDAVDGNNFSKWCYKPYDD 474

Query: 456 LVSKAMMIYDDKAR-----EAALIEAVKVAITDGAIIPLYQQSNAWV 497
           L+ +A    D   R     +A  I   +V IT  A   +YQ  +A V
Sbjct: 475 LIKQAKATSDQAKRTELYQKAQHILKEQVPITPIAHSTVYQPMSAKV 521