Pairwise Alignments

Query, 519 a.a., ABC transporter substrate binding protein (oligopeptide) from Agrobacterium fabrum C58

Subject, 530 a.a., dipeptide ABC transporter - periplasmic binding protein from Pseudomonas putida KT2440

 Score =  123 bits (309), Expect = 1e-32
 Identities = 120/494 (24%), Positives = 204/494 (41%), Gaps = 51/494 (10%)

Query: 13  IGLVAQP--VMAKNLTIGLSGTVTSIDPHFYNASPNNAIAMQIFDRLTERTAEGRLVE-G 69
           +GLV+Q   ++A NL     G+    D   Y ++ +N  A  I++RL E    G  V   
Sbjct: 13  LGLVSQSPVLLANNLVFCSEGSPAGFDTAQYTSATDNDAAEPIYNRLVEFERGGTAVHPA 72

Query: 70  LATKWDTVSE-TKWRFALRDGVKWHDGKPFT------SDDVIFTLDRA--------GSVP 114
           LAT W+      ++ F LR+GV++H  K F+      +DDV+FT +R          + P
Sbjct: 73  LATHWEVSDNGLRYTFHLREGVRFHSNKAFSPSRTFNADDVLFTFNRMLDKGHRFRQAYP 132

Query: 115 NSPGGFGGFM--RNIASVEADGDNAVIISTKAPAPTLPGDLAN--IAIVSRHAGEG--AD 168
                F G    +NIA VE      V+ +          +LA    +I+S    E   A 
Sbjct: 133 TEFPYFNGMGLDKNIARVEKTDPLTVVFTLNTVDAAFIQNLAMSFASILSAEYAEQLLAS 192

Query: 169 TADYNSGKAAIGTGAFRLTTFKQGIEVGLERNPDWWG-KKVAWDHATYRMISSASARTTA 227
               +  +  IGTG F    +++  ++  + N D+W   +V  D+  + + +  S R   
Sbjct: 193 GRPSDINQQPIGTGPFVFQRYQKDSQIRYKGNKDYWAANEVKIDNLVFSINTDPSVRIQK 252

Query: 228 ALAGDVDVIDAPAATDIARFKTTANLSFVSTPGLRVIYLAPSTSGDAWKAFVKGPKGEAL 287
               +  V   P   D+   K  + L  +  PG  + Y+A +T                 
Sbjct: 253 LRRNECQVTLHPRPADLPALKADSTLQVLQQPGFNLGYIAYNTQ---------------- 296

Query: 288 DNNPLADPRVRNALSEAINREGIVDKIMEGTATASGQWLPKGAFSYTPDIQPPKPDAAGA 347
            + P     VR A+  A+N+E I+  + +     +   +P   +SY   I+        A
Sbjct: 297 -HPPFDRLEVRQAMDMAVNKEAILQAVYQDAGQRAVNAMPPTQWSYDDSIKDAPYAPEKA 355

Query: 348 KKLLADAGYPDGFQLT---VHVPNDRYPNAPAVVQAVAQMWTRIGVKTNVEALPWTTFSS 404
           ++L+  AG   G ++T   + V     PNA  + + +   W+++G K  + +  W  +  
Sbjct: 356 RQLIQQAGVKPGTEITLWAMPVQRPYNPNAKLMAEMLQADWSKLGFKVRIVSYEWGEYLK 415

Query: 405 R--KSEFAMKLLGLGNATYDASSMLVNVLGTVDPKRGLGAANDSGYSNPALDDLVSKAMM 462
           R    E  + L+G      D      N LGT+     +G+ N S + +P  D LV +A  
Sbjct: 416 RMKNGEHDIALIGWTGDNGDPD----NWLGTLYSCDAIGSNNYSQWCDPQYDSLVKQAKQ 471

Query: 463 IYDDKAREAALIEA 476
           + D   R A   +A
Sbjct: 472 VTDRTQRTALYQQA 485