Pairwise Alignments

Query, 519 a.a., ABC transporter substrate binding protein (oligopeptide) from Agrobacterium fabrum C58

Subject, 535 a.a., ABC-type dipeptide transport system, periplasmic component from Enterobacter asburiae PDN3

 Score =  153 bits (387), Expect = 1e-41
 Identities = 140/520 (26%), Positives = 223/520 (42%), Gaps = 61/520 (11%)

Query: 1   MMKTGVLLL-TSLIGL-VAQPVMAKNLTIGLSGTVTSIDPHFYNASPN-NAIAMQIFDRL 57
           + K+G+L L  SL+ + VA  V AK L     G+    +P  + +    +A ++ I++RL
Sbjct: 5   LKKSGMLKLGLSLVAMTVAASVQAKTLVYCSEGSPEGFNPQLFTSGTTYDASSVPIYNRL 64

Query: 58  TE-RTAEGRLVEGLATKWDTVSETK-WRFALRDGVKWHDGKPF------TSDDVIFTLDR 109
            E +T    ++ GLA KWD   + K + F LR GVKW D K F       +DDV+F+ DR
Sbjct: 65  VEFKTGTTEVIPGLAEKWDVSEDGKTYTFHLRQGVKWQDSKEFKPTRDFNADDVVFSFDR 124

Query: 110 AGSVPN-----SPGGFG-----GFMRNIASVEADGDNAV-IISTKAPAPTLPGDLAN--I 156
             +  N     S G +      G    IA V+   D  V  + T+  AP L  DLA    
Sbjct: 125 QKNAQNPYHKVSGGSYEYFEGMGLPDLIAEVKKVDDKTVQFVLTRPEAPFL-ADLAMDFA 183

Query: 157 AIVSRHAGEGA------DTADYNSGKAAIGTGAFRLTTFKQGIEVGLERNPDWWGKKVAW 210
           +I+S+   +        +  D N     IGTG F+L  +++   +  +    +WG K   
Sbjct: 184 SILSKEYADNMLKAGTPEKVDLNP----IGTGPFQLLQYQKDSRILYKAFEGYWGTKPQI 239

Query: 211 DHATYRMISSASARTTAALAGDVDVIDAPAATDIARFKTTANLSFVSTPGLRVIYLAPST 270
           D   + +   AS R       +  V+  P   DIAR K   N++ +   GL V YL+ +T
Sbjct: 240 DRLVFSITPDASVRYAKLQKNECQVMPYPNPADIARMKQDKNINLLEQAGLNVGYLSFNT 299

Query: 271 SGDAWKAFVKGPKGEALDNNPLADPRVRNALSEAINREGIVDKIMEGTATASGQWLPKGA 330
                            +  P  D +VR AL+ A+N+E I+  + +G   A+   +P   
Sbjct: 300 -----------------EKKPFDDVKVRQALTYAVNKEAIIKAVYQGAGVAAKNLIPPTM 342

Query: 331 FSYTPDIQPPKPDAAGAKKLLADAGYPDGFQL---TVHVPNDRYPNAPAVVQAVAQMWTR 387
           + Y  D++    D   AK LL +AG   GF +    + V     PNA  + + V   W +
Sbjct: 343 WGYNDDVKDYTYDPEKAKALLKEAGQDKGFTVELWAMPVQRPYNPNARRMAEMVQADWAK 402

Query: 388 IGVKTNVEALPWTTFSSR--KSEFAMKLLGLGNATYDASSMLVNVLGTVDPKRGLGAAND 445
           +GV+  +    W  +  R    E    ++G      D  +    +      K G   +N 
Sbjct: 403 VGVQAKIVTYEWGEYLKRAKAGEHQAVMMGWTGDNGDPDNFFATLFSCAAAKDG---SNY 459

Query: 446 SGYSNPALDDLVSKAMMIYDDKAREAALIEAVKVAITDGA 485
           S +     +DL+  A    DD  +   L +  +V + D A
Sbjct: 460 SRWCYKPFEDLIQPARAT-DDHNKRIELYKQAQVVMHDQA 498